Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater

Fungi ahoy! Diversity on marine wooden substrata in the high North

(2014) Teppo Rämä et al.   Fungal Ecology

Microbial Communities in Sunken Wood Are Structured by Wood-Boring Bivalves and Location in a Submarine Canyon

(2014) Sonja K. Fagervold et al.   PLoS One

Dynamics of wood fall colonization in relation to sulfide concentration in a mangrove swamp

(2013) Mélina C.Z. Laurent et al.   MARINE ENVIRONMENTAL RESEARCH

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

The First Genomic and Proteomic Characterization of a Deep-Sea Sulfate Reducer: Insights into the Piezophilic Lifestyle of Desulfovibrio piezophilus

(2013) Nathalie Pradel et al.   PLoS One

How Deep-Sea Wood Falls Sustain Chemosynthetic Life

(2013) Christina Bienhold et al.   PLoS One

Microbial communities associated with the degradation of oak wood in the Blanes submarine canyon and its adjacent open slope (NW Mediterranean)

(2013) S.K. Fagervold et al.   PROGRESS IN OCEANOGRAPHY

New insights concerning the occurrence of fungi in water sources and their potential pathogenicity

(2013) B.R. Oliveira et al.   WATER RESEARCH

Sulfide production and consumption in degrading wood in the marine environment

(2012) Mustafa Yücel et al.   CHEMOSPHERE

Sunken woods on the ocean floor provide diverse specialized habitats for microorganisms

(2012) Sonja K. Fagervold et al.   FEMS MICROBIOLOGY ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments

(2011) Takahiko Nagahama et al.   ENVIRONMENTAL MICROBIOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

First description of giant Archaea (Thaumarchaeota) associated with putative bacterial ectosymbionts in a sulfidic marine habitat

(2010) Félix Muller et al.   ENVIRONMENTAL MICROBIOLOGY

A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks

(2010) Jianxin Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Desulfovibrio piezophilus sp. nov., a piezophilic, sulfate-reducing bacterium isolated from wood falls in the Mediterranean Sea

(2010) S. Khelaifia et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Diversity and richness of marine fungi on two Portuguese marinas

(2010) Egidia Azevedo et al.   NOVA HEDWIGIA

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents

(2009) Gaëtan Burgaud et al.   ENVIRONMENTAL MICROBIOLOGY

Highly Similar Prokaryotic Communities of Sunken Wood at Shallow and Deep-Sea Sites Across the Oceans

(2009) Carmen Palacios et al.   MICROBIAL ECOLOGY

Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage

(2008) K. Robert Clarke et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Wood-fall associations from Late Cretaceous deep-water sediments of Hokkaido, Japan

(2008) STEFFEN KIEL et al.   LETHAIA

Misidentification of the Bray-Curtis similarity index

(2008) PM Yoshioka   MARINE ECOLOGY PROGRESS SERIES

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY