Plant root-microbe communication in shaping root microbiomes

Signal molecules and cell-surface components involved in early stages of the legume–rhizobium interactions

(2015) Monika Janczarek et al.   APPLIED SOIL ECOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Redox Metabolites Signal Polymicrobial Biofilm Development via the NapA Oxidative Stress Cascade in Aspergillus

(2015) He Zheng et al.   CURRENT BIOLOGY

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

The Novel Lipopeptide Poaeamide of the EndophytePseudomonas poaeRE*1-1-14 Is Involved in Pathogen Suppression and Root Colonization

(2015) Christin Zachow et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Activation of Symbiosis Signaling by Arbuscular Mycorrhizal Fungi in Legumes and Rice

(2015) Jongho Sun et al.   PLANT CELL

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Colonization of Trichoderma harzianum strain SQR-T037 on tomato roots and its relationship to plant growth, nutrient availability and soil microflora

(2014) Feng Cai et al.   PLANT AND SOIL

N-Acyl-Homoserine Lactone Primes Plants for Cell Wall Reinforcement and Induces Resistance to Bacterial Pathogens via the Salicylic Acid/Oxylipin Pathway

(2014) S. T. Schenk et al.   PLANT CELL

The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling

(2014) Aurélien Bailly et al.   PLANT JOURNAL

Bacterial quorum sensing and metabolic slowing in a cooperative population

(2014) J. H. An et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of root colonization with Piriformospora indica and phosphate availability on the growth and reproductive biology of a Cyclamen persicum cultivar

(2014) Ghofran Ghanem et al.   SCIENTIA HORTICULTURAE

Recent progress in the chemistry and chemical biology of microbial signaling molecules: quorum-sensing pheromones and microbial hormones

(2014) Arata Yajima   TETRAHEDRON LETTERS

Inoculation of rapeseed under different rates of inorganic nitrogen and sulfur fertilizer: impact on water relations, cell membrane stability, chlorophyll content and yield

(2014) Ali Namvar et al.   Archives of Agronomy and Soil Science

Mutualistic interaction betweenSalmonella entericaandAspergillus nigerand its effects onZea mayscolonization

(2014) Roberto Balbontín et al.   Microbial Biotechnology

Soil microbes and the availability of soil nutrients

(2013) M. Miransari   ACTA PHYSIOLOGIAE PLANTARUM

The root microbiome influences scales from molecules to ecosystems: The unseen majority1

(2013) Marnie E. Rout et al.   AMERICAN JOURNAL OF BOTANY

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Synergism and context dependency of interactions between arbuscular mycorrhizal fungi and rhizobia with a prairie legume

(2013) Anna L. Larimer et al.   ECOLOGY

Genome-wide investigation of cellular targets and mode of action of the antifungal bacterial metabolite 2,4-diacetylphloroglucinol inSaccharomyces cerevisiae

(2013) Danielle M. Troppens et al.   FEMS YEAST RESEARCH

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Linking Plant Nutritional Status to Plant-Microbe Interactions

(2013) Lilia C. Carvalhais et al.   PLoS One

Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection

(2013) Yang Song et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The soil resistome: The anthropogenic, the native, and the unknown

(2013) Eddie Cytryn   SOIL BIOLOGY & BIOCHEMISTRY

Mycorrhiza-induced resistance: more than the sum of its parts?

(2013) Duncan D. Cameron et al.   TRENDS IN PLANT SCIENCE

The rhizosphere revisited: root microbiomics

(2013) Peter A. H. M. Bakker et al.   Frontiers in Plant Science

Foliar aphid feeding recruits rhizosphere bacteria and primes plant immunity against pathogenic and non-pathogenic bacteria in pepper

(2012) Boyoung Lee et al.   ANNALS OF BOTANY

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

(2012) Jos M. Raaijmakers et al.   Annual Review of Phytopathology

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

The role of flavonoids in root-rhizosphere signalling: opportunities and challenges for improving plant-microbe interactions

(2012) S. Hassan et al.   JOURNAL OF EXPERIMENTAL BOTANY

COINOCULATION OFRHIZOBIUM LEGUMINOSARUM-PR1 WITH A COLD TOLERANTPSEUDOMONASSP. IMPROVES IRON ACQUISITION, NUTRIENT UPTAKE AND GROWTH OF FIELD PEA (PISUM SATIVUML.)

(2012) Pankaj K. Mishra et al.   JOURNAL OF PLANT NUTRITION

Application of Trichoderma harzianum SQR-T037 bio-organic fertiliser significantly controls Fusarium wilt and affects the microbial communities of continuously cropped soil of cucumber

(2012) Li-Hua Chen et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Quorum sensing in fungi – a review

(2012) Patrícia Albuquerque et al.   MEDICAL MYCOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The role of the gut microbiota in nutrition and health

(2012) Harry J. Flint et al.   Nature Reviews Gastroenterology & Hepatology

Microbe-Associated Molecular Patterns-Triggered Root Responses Mediate Beneficial Rhizobacterial Recruitment in Arabidopsis

(2012) V. Lakshmanan et al.   PLANT PHYSIOLOGY

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review

(2011) Rogier F. Doornbos et al.   Agronomy for Sustainable Development

The Multifactorial Basis for Plant Health Promotion by Plant-Associated Bacteria

(2011) Young Cheol Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution and some functions of the NprR–NprRB quorum-sensing system in the Bacillus cereus group

(2011) Jorge Rocha et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Shifting the balance: antibiotic effects on host–microbiota mutualism

(2011) Benjamin P. Willing et al.   NATURE REVIEWS MICROBIOLOGY

Sebacinales Everywhere: Previously Overlooked Ubiquitous Fungal Endophytes

(2011) Michael Weiß et al.   PLoS One

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis – model and research methods

(2011) Petra Marschner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes

(2010) Leland S. Pierson et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A Phosphate Transporter from the Root Endophytic FungusPiriformospora indicaPlays a Role in Phosphate Transport to the Host Plant

(2010) Vikas Yadav et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Impact of inoculation with Azospirillum spp. on growth properties and seed yield of wheat: a meta-analysis of studies in the ISI Web of Science from 1981 to 2008

(2010) Stavros D. Veresoglou et al.   PLANT AND SOIL

The interactive effects of plant microbial symbionts: a review and meta-analysis

(2010) Anna L. Larimer et al.   SYMBIOSIS

Co-inoculation of the endophytic fungus Piriformospora indica with the phosphate-solubilising bacterium Pseudomonas striata affects population dynamics and plant growth in chickpea

(2009) Kamlesh K. Meena et al.   BIOLOGY AND FERTILITY OF SOILS

The role of antibiotics and antibiotic resistance in nature

(2009) Rustam I. Aminov   ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Quorum sensing and social networking in the microbial world

(2009) S. Atkinson et al.   Journal of the Royal Society Interface

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Piriformospora indica, a cultivable root endophyte with multiple biotechnological applications

(2009) Ralf Oelmüller et al.   SYMBIOSIS

Bacillus thuringiensis: applications in agriculture and insect resistance management. A review

(2008) Vincent Sanchis et al.   Agronomy for Sustainable Development

Striga infestation of cereal crops – an unsolved problem in resource limited agriculture

(2008) Julie D Scholes et al.   CURRENT OPINION IN PLANT BIOLOGY

Community analysis of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilization trial

(2008) Jonas F. Toljander et al.   FEMS MICROBIOLOGY ECOLOGY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

2,4-Diacetylphloroglucinol Alters Plant Root Development

(2008) Jessica N. Brazelton et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

Root-Secreted Malic Acid Recruits Beneficial Soil Bacteria

(2008) T. Rudrappa et al.   PLANT PHYSIOLOGY