Engineering chemical interactions in microbial communities

Efficacy of Sterile Fecal Filtrate Transfer for Treating Patients With Clostridium difficile Infection

(2017) Stephan J. Ott et al.   GASTROENTEROLOGY

Leptogenic effects of NAPE require activity of NAPE-hydrolyzing phospholipase D

(2017) Zhongyi Chen et al.   JOURNAL OF LIPID RESEARCH

Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation

(2017) Kristina N‐M Daeffler et al.   Molecular Systems Biology

Commensal bacteria make GPCR ligands that mimic human signalling molecules

(2017) Louis J. Cohen et al.   NATURE

Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation

(2017) David T Riglar et al.   NATURE BIOTECHNOLOGY

Colibactin assembly line enzymes use S-adenosylmethionine to build a cyclopropane ring

(2017) Li Zha et al.   Nature Chemical Biology

A prominent glycyl radical enzyme in human gut microbiomes metabolizestrans-4-hydroxy-l-proline

(2017) B. J. Levin et al.   SCIENCE

Lactobacillus reuteriinduces gut intraepithelial CD4+CD8αα+T cells

(2017) Luisa Cervantes-Barragan et al.   SCIENCE

Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models

(2017) In Young Hwang et al.   Nature Communications

Extensive horizontal gene transfer in cheese-associated bacteria

(2017) Kevin S Bonham et al.   eLife

Antimicrobial Probiotics Reduce Salmonella enterica in Turkey Gastrointestinal Tracts

(2017) Brittany Forkus et al.   Scientific Reports

Gamma-aminobutyric acid production through GABA shunt by synthetic scaffolds introduction in recombinant Escherichia coli

(2016) Van Dung Pham et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Biosensor-based engineering of biosynthetic pathways

(2016) Jameson K Rogers et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Novel Microbiome Therapeutic Increases Gut Microbial Diversity and Prevents RecurrentClostridium difficileInfection

(2016) Sahil Khanna et al.   JOURNAL OF INFECTIOUS DISEASES

A Mechanistic Model for Colibactin-Induced Genotoxicity

(2016) Alan R. Healy et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Human commensals producing a novel antibiotic impair pathogen colonization

(2016) Alexander Zipperer et al.   NATURE

Microcins mediate competition among Enterobacteriaceae in the inflamed gut

(2016) Martina Sassone-Corsi et al.   NATURE

Epithelial glycosylation in gut homeostasis and inflammation

(2016) Yoshiyuki Goto et al.   NATURE IMMUNOLOGY

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genome-wide screen identifies host colonization determinants in a bacterial gut symbiont

(2016) J. Elijah Powell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Design and synthesis of a minimal bacterial genome

(2016) C. A. Hutchison et al.   SCIENCE

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Stability of Cross-Feeding Polymorphisms in Microbial Communities

(2016) Ivana Gudelj et al.   PLoS Computational Biology

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

(2016) Sandrine Brugiroux et al.   Nature Microbiology

Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase

(2015) Tao Xu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Redirection of Metabolic Flux into Novel Gamma-Aminobutyric Acid Production Pathway by Introduction of Synthetic Scaffolds Strategy in Escherichia Coli

(2015) Van Dung Pham et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417

(2015) Roeland L. Berendsen et al.   BMC GENOMICS

Non-lethal Inhibition of Gut Microbial Trimethylamine Production for the Treatment of Atherosclerosis

(2015) Zeneng Wang et al.   CELL

Synthetic biology expands chemical control of microorganisms

(2015) Tyler J Ford et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system

(2015) Yi Wang et al.   JOURNAL OF BIOTECHNOLOGY

Role of root microbiota in plant productivity

(2015) A. Tkacz et al.   JOURNAL OF EXPERIMENTAL BOTANY

Intestinal Fucose as a Mediator of Host–Microbe Symbiosis

(2015) Joseph M. Pickard et al.   JOURNAL OF IMMUNOLOGY

Improving microbial fitness in the mammalian gut by in vivo temporal functional metagenomics

(2015) S. J. Yaung et al.   Molecular Systems Biology

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

Microbial cocktails join fecal transplants in IBD treatment trials

(2015) Mark Ratner   NATURE BIOTECHNOLOGY

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial Modulation of Plant Ethylene Levels

(2015) Elisa Gamalero et al.   PLANT PHYSIOLOGY

Specificity of Signal-Binding via Non-AHL LuxR-Type Receptors

(2015) Sophie Brameyer et al.   PLoS One

Functional metagenomic discovery of bacterial effectors in the human microbiome and isolation of commendamide, a GPCR G2A/132 agonist

(2015) Louis J. Cohen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products

(2015) Chad W. Johnston et al.   Nature Communications

Manipulation of the Quorum Sensing Signal AI-2 Affects the Antibiotic-Treated Gut Microbiota

(2015) Jessica Ann Thompson et al.   Cell Reports

Current and future resources for functional metagenomics

(2015) Kathy N. Lam et al.   Frontiers in Microbiology

Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds

(2015) Menno Van Der Voort et al.   Frontiers in Microbiology

Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota

(2015) Mark Mimee et al.   Cell Systems

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Rhizosphere interactions: root exudates, microbes, and microbial communities

(2014) Xing-Feng Huang et al.   Botany

Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut

(2014) Patrick H. Degnan et al.   Cell Host & Microbe

Oral, Capsulized, Frozen Fecal Microbiota Transplantation for RelapsingClostridium difficileInfection

(2014) Ilan Youngster et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Incorporation of therapeutically modified bacteria into gut microbiota inhibits obesity

(2014) Zhongyi Chen et al.   JOURNAL OF CLINICAL INVESTIGATION

Paneth cell extrusion and release of antimicrobial products is directly controlled by immune cell–derived IFN-γ

(2014) Henner F. Farin et al.   JOURNAL OF EXPERIMENTAL MEDICINE

The Yin and Yang of Bacterial Resilience in the Human Gut Microbiota

(2014) Molly K. Gibson et al.   JOURNAL OF MOLECULAR BIOLOGY

β-Carotene–Producing Bacteria Residing in the Intestine Provide Vitamin A to Mouse Tissues In Vivo

(2014) Lesley Wassef et al.   JOURNAL OF NUTRITION

Biofertilizers function as key player in sustainable agriculture by improving soil fertility, plant tolerance and crop productivity

(2014) Deepak Bhardwaj et al.   Microbial Cell Factories

From food to cell: nutrient exploitation strategies of enteropathogens

(2014) L. Staib et al.   MICROBIOLOGY-SGM

Rapid fucosylation of intestinal epithelium sustains host–commensal symbiosis in sickness

(2014) Joseph M. Pickard et al.   NATURE

Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases

(2014) Robert J Citorik et al.   NATURE BIOTECHNOLOGY

Understanding the role of gut microbiome in metabolic disease risk

(2014) Yolanda Sanz et al.   PEDIATRIC RESEARCH

Metabolomics Analysis Identifies Intestinal Microbiota-Derived Biomarkers of Colonization Resistance in Clindamycin-Treated Mice

(2014) Robin L. P. Jump et al.   PLoS One

Exopolysaccharide Biosynthesis Enables Mature Biofilm Formation on Abiotic Surfaces by Herbaspirillum seropedicae

(2014) Eduardo Balsanelli et al.   PLoS One

Global discovery of colonization determinants in the squid symbiontVibrio fischeri

(2014) John F. Brooks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Innate lymphoid cells regulate intestinal epithelial cell glycosylation

(2014) Y. Goto et al.   SCIENCE

Synthetic Microbes As Drug Delivery Systems

(2014) Jan Claesen et al.   ACS Synthetic Biology

Nutrient cross-feeding in the microbial world

(2014) Erica C. Seth et al.   Frontiers in Microbiology

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

Butyrate production in engineeredEscherichia coliwith synthetic scaffolds

(2013) Jang-Mi Baek et al.   BIOTECHNOLOGY AND BIOENGINEERING

Omics approaches to study host–microbiota interactions

(2013) Peter van Baarlen et al.   CURRENT OPINION IN MICROBIOLOGY

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

Screening for Enhanced Triacetic Acid Lactone Production by Recombinant Escherichia coli Expressing a Designed Triacetic Acid Lactone Reporter

(2013) Shuang-Yan Tang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Bacterial Superoxide Dismutase and Glutathione Reductase Are Crucial for Endophytic Colonization of Rice Roots byGluconacetobacter diazotrophicusPAL5

(2013) Sylvia Alquéres et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Engineering dynamic pathway regulation using stress-response promoters

(2013) Robert H Dahl et al.   NATURE BIOTECHNOLOGY

Bacterial Traits Involved in Colonization of Arabidopsis thaliana Roots by Bacillus amyloliquefaciens FZB42

(2013) Kristin Dietel et al.   Plant Pathology Journal

Nutritional Basis for Colonization Resistance by Human Commensal Escherichia coli Strains HS and Nissle 1917 against E. coli O157:H7 in the Mouse Intestine

(2013) Rosalie Maltby et al.   PLoS One

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

(2013) D. Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A quorum-sensing inhibitor blocks Pseudomonas aeruginosa virulence and biofilm formation

(2013) C. T. O'Loughlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control

(2013) S. T. Rutherford et al.   Cold Spring Harbor Perspectives in Medicine

Preparing synthetic biology for the world

(2013) Gerd H. G. Moe-Behrens et al.   Frontiers in Microbiology

Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut

(2013) Elaine O Petrof et al.   Microbiome

β-Carotene Biosynthesis in Probiotic Bacteria

(2013) Jennifer K. Miller et al.   Probiotics and Antimicrobial Proteins

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

(2012) Jean Guy LeBlanc et al.   CURRENT OPINION IN BIOTECHNOLOGY

Pyoverdine biosynthesis and secretion inPseudomonas aeruginosa: implications for metal homeostasis

(2012) Isabelle J. Schalk et al.   ENVIRONMENTAL MICROBIOLOGY

ACC deaminase genes are conserved amongMesorhizobiumspecies able to nodulate the same host plant

(2012) Francisco X. Nascimento et al.   FEMS MICROBIOLOGY LETTERS

An update on progress and the changing epidemiology of causes of childhood blindness worldwide

(2012) Lingkun Kong et al.   JOURNAL OF AAPOS

Quorum Sensing of Bacteria and Trans-Kingdom Interactions of N-Acyl Homoserine Lactones with Eukaryotes

(2012) Anton Hartmann et al.   JOURNAL OF CHEMICAL ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

How glycan metabolism shapes the human gut microbiota

(2012) Nicole M. Koropatkin et al.   NATURE REVIEWS MICROBIOLOGY

Benzoxazinoids in Root Exudates of Maize Attract Pseudomonas putida to the Rhizosphere

(2012) Andrew L. Neal et al.   PLoS One

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations

(2012) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme

(2012) S. Craciun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens

(2012) K. J. Forsberg et al.   SCIENCE

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Iron-regulated metabolites produced byPseudomonas fluorescensWCS374r are not required for eliciting induced systemic resistance againstPseudomonas syringaepv.tomatoin Arabidopsis

(2012) Mohammad Djavaheri et al.   MicrobiologyOpen

Mechanism of Vibrio cholerae Autoinducer-1 Biosynthesis

(2011) Yunzhou Wei et al.   ACS Chemical Biology

β-Carotene and its cleavage enzyme β-carotene-15,15′-oxygenase (CMOI) affect retinoid metabolism in developing tissues

(2011) Youn-Kyung Kim et al.   FASEB JOURNAL

Structure and functions of exopolysaccharide produced by gut commensal Lactobacillus reuteri 100-23

(2011) Ian M Sims et al.   ISME Journal

Bacterial-Fungal Interactions: Hyphens between Agricultural, Clinical, Environmental, and Food Microbiologists

(2011) P. Frey-Klett et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Exopolysaccharide Production Is Required for Biofilm Formation and Plant Colonization by the Nitrogen-Fixing EndophyteGluconacetobacter diazotrophicus

(2011) Carlos H. S. G. Meneses et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Enhanced chickpea growth-promotion ability of a Mesorhizobium strain expressing an exogenous ACC deaminase gene

(2011) F. Nascimento et al.   PLANT AND SOIL

Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants

(2011) Ilka Schoenian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Folate Production by Probiotic Bacteria

(2011) Maddalena Rossi et al.   Nutrients

How Many Species Are There on Earth and in the Ocean?

(2011) Camilo Mora et al.   PLOS BIOLOGY

Functional Metagenomic Investigations of the Human Intestinal Microbiota

(2011) Aimee M. Moore et al.   Frontiers in Microbiology

Design and Application of a Mevalonate-Responsive Regulatory Protein

(2010) Shuang-Yan Tang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Adding New Chemistries to the Genetic Code

(2010) Chang C. Liu et al.   Annual Review of Biochemistry

Use of two-component signal transduction systems in the construction of synthetic genetic networks

(2010) Alexander J Ninfa   CURRENT OPINION IN MICROBIOLOGY

Persistence of probiotic strains in the gastrointestinal tract when administered as capsules, yoghurt, or cheese

(2010) Maija Saxelin et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

(2010) J. L. Round et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model

(2010) F. Duan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Biosynthesis of Alkanes

(2010) A. Schirmer et al.   SCIENCE

Vitamins in plants: occurrence, biosynthesis and antioxidant function

(2010) M. Amparo Asensi-Fabado et al.   TRENDS IN PLANT SCIENCE

Role of fungal trehalose and bacterial thiamine in the improved survival and growth of the ectomycorrhizal fungus Laccaria bicolor S238N and the helper bacterium Pseudomonas fluorescens BBc6R8

(2010) A. Deveau et al.   Environmental Microbiology Reports

Bacterial Quorum-Sensing Network Architectures

(2009) Wai-Leung Ng et al.   Annual Review of Genetics

Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat

(2009) Andrew L. Goodman et al.   Cell Host & Microbe

Discovery and Characterization of anArabidopsis thaliana N-Acylphosphatidylethanolamine Synthase

(2009) Lionel Faure et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Vibrio cholerae quorum-sensing autoinducer CAI-1: analysis of the biosynthetic enzyme CqsA

(2009) Robert C Kelly et al.   Nature Chemical Biology

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota

(2009) D. V. Badri et al.   PLANT PHYSIOLOGY

The bacterial signal indole increases epithelial-cell tight-junction resistance and attenuates indicators of inflammation

(2009) T. Bansal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

Homing in on iron homeostasis in plants

(2009) Jeeyon Jeong et al.   TRENDS IN PLANT SCIENCE

InterruptingVibrio choleraeinfection of human epithelial cells with engineered commensal bacterial signaling

(2008) Faping Duan et al.   BIOTECHNOLOGY AND BIOENGINEERING

Comparison of Carbon Nutrition for Pathogenic and Commensal Escherichia coli Strains in the Mouse Intestine

(2008) A. J. Fabich et al.   INFECTION AND IMMUNITY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Role of Staphylococcus aureus Catalase in Niche Competition against Streptococcus pneumoniae

(2008) B. Park et al.   JOURNAL OF BACTERIOLOGY

Improvement of Drought Tolerance and Grain Yield in Common Bean by Overexpressing Trehalose-6-Phosphate Synthase in Rhizobia

(2008) Ramón Suárez et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Engineering microbial consortia: a new frontier in synthetic biology

(2008) Katie Brenner et al.   TRENDS IN BIOTECHNOLOGY