Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

(2016) Junxing Yang et al.   BMC BIOLOGY

Draft genome sequence of the silver pomfret fish, Pampus argenteus

(2016) Sabah AlMomin et al.   GENOME

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

(2016) Ingo Braasch et al.   NATURE GENETICS

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

The contribution of transposable elements to size variations between four teleost genomes

(2016) Bo Gao et al.   Mobile DNA

The genome of the miiuy croaker reveals well-developed innate immune and sensory systems

(2016) Tianjun Xu et al.   Scientific Reports

An improved genome reference for the African cichlid, Metriaclima zebra

(2015) Matthew A. Conte et al.   BMC GENOMICS

Transposable elements and early evolution of sex chromosomes in fish

(2015) Domitille Chalopin et al.   CHROMOSOME RESEARCH

Sequencing and de novo draft assemblies of a fathead minnow (Pimephales promelas) reference genome

(2015) Frank R. Burns et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

Population genomics of natural and experimental populations of guppies (Poecilia reticulata)

(2015) Bonnie A. Fraser et al.   MOLECULAR ECOLOGY

Whole-genome sequence of the Tibetan frogNanorana parkeriand the comparative evolution of tetrapod genomes

(2015) Yan-Bo Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interpreting Lamprey Attacks on Pacific Cod in the Eastern Bering Sea

(2015) Kevin A. Siwicke et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Draft Sequencing and Analysis of the Genome of Pufferfish Takifugu flavidus

(2014) Yang Gao et al.   DNA RESEARCH

Recurrent Horizontal Transfers of Chapaev Transposons in Diverse Invertebrate and Vertebrate Animals

(2014) Hua-Hao Zhang et al.   Genome Biology and Evolution

Gene Conversion Violates the Stepwise Mutation Model for Microsatellites in Y-Chromosomal Palindromic Repeats

(2014) Patricia Balaresque et al.   HUMAN MUTATION

Elephant shark genome provides unique insights into gnathostome evolution

(2014) Byrappa Venkatesh et al.   NATURE

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

(2014) Peng Xu et al.   NATURE GENETICS

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

(2014) Eric B. Rondeau et al.   PLoS One

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

Transposable element islands facilitate adaptation to novel environments in an invasive species

(2014) Lukas Schrader et al.   Nature Communications

The draft genome of the large yellow croaker reveals well-developed innate immunity

(2014) Changwen Wu et al.   Nature Communications

The cavefish genome reveals candidate genes for eye loss

(2014) Suzanne E. McGaugh et al.   Nature Communications

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

(2013) Manfred Schartl et al.   NATURE GENETICS

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

(2013) Jeramiah J Smith et al.   NATURE GENETICS

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

(2013) Y. Nakamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Dfam: a database of repetitive DNA based on profile hidden Markov models

(2012) Travis J. Wheeler et al.   NUCLEIC ACIDS RESEARCH

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

The genome sequence of Atlantic cod reveals a unique immune system

(2011) Bastiaan Star et al.   NATURE

Similarities, Differences, and Unknowns in Biology and Management of Three Parasitic Lampreys of North America

(2010) Benjamin J. Clemens et al.   FISHERIES

Movement behaviour of the small benthic Rhine sculpin Cottus rhenanus (Freyhof, Kottelat & Nolte, 2005) as revealed by radio-telemetry and pit-tagging

(2009) Michaël Ovidio et al.   HYDROBIOLOGIA

Use of a novel induced spawning technique for the first reported captive spawning of Tetraodon nigroviridis

(2009) Craig A. Watson et al.   Marine Genomics