The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Differentially-expressedopsingenes identified inSinocyclocheiluscavefish endemic to China

(2016) Fanwei Meng et al.   Current Zoology

Stability versus diversity of the dentition during evolutionary radiation in cyprinine fish

(2014) E. Pasco-Viel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Role of crystallins in ocular neuroprotection and axonal regeneration

(2014) Solon Thanos et al.   PROGRESS IN RETINAL AND EYE RESEARCH

The cavefish genome reveals candidate genes for eye loss

(2014) Suzanne E. McGaugh et al.   Nature Communications

Evidence for hearing loss in amblyopsid cavefishes

(2013) M. L. Niemiller et al.   Biology Letters

Sensory Adaptations of Fishes to Subterranean Environments

(2013) Daphne Soares et al.   BIOSCIENCE

Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish

(2013) H. G. Frohnhofer et al.   DEVELOPMENT

Evolution of the Eye Transcriptome under Constant Darkness in Sinocyclocheilus Cavefish

(2013) Fanwei Meng et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Potential Benefit of Albinism in Astyanax Cavefish: Downregulation of the oca2 Gene Increases Tyrosine and Catecholamine Levels as an Alternative to Melanin Synthesis

(2013) Helena Bilandžija et al.   PLoS One

Drought and China's Cave Species

(2013) S.-S. Shu et al.   SCIENCE

Cryptic Variation in Morphological Evolution: HSP90 as a Capacitor for Loss of Eyes in Cavefish

(2013) N. Rohner et al.   SCIENCE

transparent, a gene affecting stripe formation in Zebrafish, encodes the mitochondrial protein Mpv17 that is required for iridophore survival

(2013) J. Krauss et al.   Biology Open

Genome-Wide Scans for Candidate Genes Involved in the Aquatic Adaptation of Dolphins

(2012) Yan-Bo Sun et al.   Genome Biology and Evolution

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Evolutionary Convergence on Sleep Loss in Cavefish Populations

(2011) Erik R. Duboué et al.   CURRENT BIOLOGY

Phylogeography of the endemic Gymnocypris chilianensis (Cyprinidae): Sequential westward colonization followed by allopatric evolution in response to cyclical Pleistocene glaciations on the Tibetan Plateau

(2011) Kai Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Mutational screening of the USH2A gene in Spanish USH patients reveals 23 novel pathogenic mutations

(2011) Gema Garcia-Garcia et al.   Orphanet Journal of Rare Diseases

A Blind Circadian Clock in Cavefish Reveals that Opsins Mediate Peripheral Clock Photoreception

(2011) Nicola Cavallari et al.   PLOS BIOLOGY

Evolution of a Behavioral Shift Mediated by Superficial Neuromasts Helps Cavefish Find Food in Darkness

(2010) Masato Yoshizawa et al.   CURRENT BIOLOGY

Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia

(2010) J. Che et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Regressive Evolution inAstyanaxCavefish

(2009) William R. Jeffery   Annual Review of Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Reduced opsin gene expression in a cave-dwelling fish

(2009) M. Tobler et al.   Biology Letters

Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution

(2009) Yoshiyuki Yamamoto et al.   DEVELOPMENTAL BIOLOGY

Differentially expressed genes identified by cross-species microarray in the blind cavefish Astyanax

(2009) Allen G. STRICKLER et al.   Integrative Zoology

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Offspring number in a livebearing fish (Poecilia mexicana, Poeciliidae): reduced fecundity and reduced plasticity in a population of cave mollies

(2008) Rüdiger Riesch et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Comprehensive Analysis of Oculocutaneous Albinism among Non-Hispanic Caucasians Shows that OCA1 Is the Most Prevalent OCA Type

(2008) Saunie M. Hutton et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY