Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia
Authors
Keywords
-
Journal
BIOCHEMICAL SOCIETY TRANSACTIONS
Volume 46, Issue 2, Pages 269-284
Publisher
Portland Press Ltd.
Online
2018-02-23
DOI
10.1042/bst20170242
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
- (2017) Eugen Bauer et al. PLoS Computational Biology
- Evolution of organismal stoichiometry in a long-term experiment with Escherichia coli
- (2017) Caroline B. Turner et al. Royal Society Open Science
- Stoichiometric Network Analysis of Cyanobacterial Acclimation to Photosynthesis-Associated Stresses Identifies Heterotrophic Niches
- (2017) Ashley Beck et al. Processes
- Byproduct Cross Feeding and Community Stability in an In Silico Biofilm Model of the Gut Microbiome
- (2017) Michael Henson et al. Processes
- Effects of Spatial Localization on Microbial Consortia Growth
- (2017) Michael Venters et al. PLoS One
- Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species
- (2016) Poonam Phalak et al. BMC Systems Biology
- Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community
- (2016) Kristopher A. Hunt et al. ENVIRONMENTAL MICROBIOLOGY
- Adding biotic complexity alters the metabolic benefits of mutualism
- (2016) William R. Harcombe et al. EVOLUTION
- Engineering microbial consortia for controllable outputs
- (2016) Stephen R Lindemann et al. ISME Journal
- Microbial mutualism dynamics governed by dose-dependent toxicity of cross-fed nutrients
- (2016) Breah LaSarre et al. ISME Journal
- Spatial structure, cooperation and competition in biofilms
- (2016) Carey D. Nadell et al. NATURE REVIEWS MICROBIOLOGY
- Advancing microbial sciences by individual-based modelling
- (2016) Ferdi L. Hellweger et al. NATURE REVIEWS MICROBIOLOGY
- Systems-level analysis of mechanisms regulating yeast metabolic flux
- (2016) S. R. Hackett et al. SCIENCE
- The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization
- (2016) Elad Noor et al. PLoS Computational Biology
- Genome-scale modelling of microbial metabolism with temporal and spatial resolution
- (2015) M. A. Henson BIOCHEMICAL SOCIETY TRANSACTIONS
- Mathematical models for explaining the Warburg effect: a review focussed on ATP and biomass production
- (2015) S. Schuster et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Spatially-resolved metabolic cooperativity within dense bacterial colonies
- (2015) John A Cole et al. BMC Systems Biology
- Physiological, biomass elemental composition and proteomic analyses of Escherichia coli ammonium-limited chemostat growth, and comparison with iron- and glucose-limited chemostat growth
- (2015) James Patrick Folsom et al. MICROBIOLOGY-SGM
- Proteome reallocation in Escherichia coli with increasing specific growth rate
- (2015) Karl Peebo et al. Molecular BioSystems
- Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?
- (2015) Anisha Goel et al. MOLECULAR MICROBIOLOGY
- Overflow metabolism in Escherichia coli results from efficient proteome allocation
- (2015) Markus Basan et al. NATURE
- Metabolic modeling of spatial heterogeneity of biofilms in microbial fuel cells reveals substrate limitations in electrical current generation
- (2014) Nadeera Jayasinghe et al. Biotechnology Journal
- Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
- (2014) Gene-Wei Li et al. CELL
- Physiological and Proteomic Analysis of Escherichia coli Iron-Limited Chemostat Growth
- (2014) J. P. Folsom et al. JOURNAL OF BACTERIOLOGY
- Visual account of protein investment in cellular functions
- (2014) W. Liebermeister et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Syntrophic exchange in synthetic microbial communities
- (2014) M. T. Mee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
- (2014) William R. Harcombe et al. Cell Reports
- Ex Uno Plures: Clonal Reinforcement Drives Evolution of a Simple Microbial Community
- (2014) Margie Kinnersley et al. PLoS Genetics
- Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy
- (2014) Kristen A. Brileya et al. Frontiers in Microbiology
- Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
- (2013) Samay Pande et al. ISME Journal
- Glycolytic strategy as a tradeoff between energy yield and protein cost
- (2013) A. Flamholz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Strong inter-population cooperation leads to partner intermixing in microbial communities
- (2013) Babak Momeni et al. eLife
- Metabolic shifts: a fitness perspective for microbial cell factories
- (2012) Anisha Goel et al. BIOTECHNOLOGY LETTERS
- Protein elemental sparing and codon usage bias are correlated among bacteria
- (2012) JASON G. BRAGG et al. MOLECULAR ECOLOGY
- MICROBIAL CONSORTIA ENGINEERING FOR CELLULAR FACTORIES: IN VITRO TO IN SILICO SYSTEMS
- (2012) Hans C Bernstein et al. Computational and Structural Biotechnology Journal
- Cell design in bacteria as a convex optimization problem
- (2011) Anne Goelzer et al. AUTOMATICA
- Bacterial growth rate reflects a bottleneck in resource allocation
- (2011) A. Goelzer et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity
- (2011) Hans C. Bernstein et al. JOURNAL OF BIOTECHNOLOGY
- Economics of membrane occupancy and respiro-fermentation
- (2011) K. Zhuang et al. Molecular Systems Biology
- Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs
- (2011) F. Wessely et al. Molecular Systems Biology
- Molecular-level tradeoffs and metabolic adaptation to simultaneous stressors
- (2010) Ross P Carlson et al. CURRENT OPINION IN BIOTECHNOLOGY
- A resource ratio theory of cooperation
- (2010) Claire de Mazancourt et al. ECOLOGY LETTERS
- The renaissance of continuous culture in the post-genomics age
- (2010) Alan T. Bull JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Violations of robustness trade-offs
- (2010) Hiroaki Kitano Molecular Systems Biology
- Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
- (2010) Sarah-Maria Fendt et al. Molecular Systems Biology
- Emergent cooperation in microbial metabolism
- (2010) Edwin H Wintermute et al. Molecular Systems Biology
- Rapid evolution of stability and productivity at the origin of a microbial mutualism
- (2010) K. L. Hillesland et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Interdependence of Cell Growth and Gene Expression: Origins and Consequences
- (2010) M. Scott et al. SCIENCE
- Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition
- (2010) James J. Elser et al. TRENDS IN ECOLOGY & EVOLUTION
- Uncovering Metabolic Objectives Pursued by Changes of Enzyme Levels
- (2009) Sabrina Hoffmann et al. Annals of the New York Academy of Sciences
- Computing the shortest elementary flux modes in genome-scale metabolic networks
- (2009) Luis F. de Figueiredo et al. BIOINFORMATICS
- Shifts in growth strategies reflect tradeoffs in cellular economics
- (2009) Douwe Molenaar et al. Molecular Systems Biology
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
- (2009) Bryson D Bennett et al. Nature Chemical Biology
- E Unibus Plurum: Genomic Analysis of an Experimentally Evolved Polymorphism in Escherichia coli
- (2009) Margie A. Kinnersley et al. PLoS Genetics
- Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism
- (2008) Cong T. Trinh et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Decomposition of complex microbial behaviors into resource-based stress responses
- (2008) Ross P. Carlson BIOINFORMATICS
- Impact of the solvent capacity constraint on E. coli metabolism
- (2008) Alexei Vazquez et al. BMC Systems Biology
- A critical view of metabolic network adaptations
- (2008) Balázs Papp et al. HFSP Journal
- Physiological heterogeneity in biofilms
- (2008) Philip S. Stewart et al. NATURE REVIEWS MICROBIOLOGY
- BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009
- (2008) A. Chang et al. NUCLEIC ACIDS RESEARCH
- Protein material costs: single atoms can make an evolutionary difference
- (2008) Jason G. Bragg et al. TRENDS IN GENETICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started