Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat
Authors
Keywords
-
Journal
Frontiers in Plant Science
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-06-09
DOI
10.3389/fpls.2017.01019
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Identification and Expression Profiling of the Auxin Response Factors in Dendrobium officinale under Abiotic Stresses
- (2017) Zhehao Chen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Multifaceted Roles of the Ras Guanine-Nucleotide Exchange Factor ChRgf in Development, Pathogenesis, and Stress Responses of Colletotrichum higginsianum
- (2017) Qiongnan Gu et al. PHYTOPATHOLOGY
- Characterization of globulin storage proteins of a low prolamin cereal species in relation to celiac disease
- (2017) Gyöngyvér Gell et al. Scientific Reports
- Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.)
- (2016) Yuanda Lv et al. BMC GENOMICS
- Genome-wide identification and functional prediction of novel and fungi-responsive lincRNAs in Triticum aestivum
- (2016) Hong Zhang et al. BMC GENOMICS
- Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice
- (2016) Pil Joong Chung et al. BMC GENOMICS
- A benchmark of gene expression tissue-specificity metrics
- (2016) Nadezda Kryuchkova-Mostacci et al. BRIEFINGS IN BIOINFORMATICS
- miRNAFold: a web server for fast miRNA precursor prediction in genomes
- (2016) Christophe Tav et al. NUCLEIC ACIDS RESEARCH
- PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
- (2016) Jinpu Jin et al. NUCLEIC ACIDS RESEARCH
- Ca2+/Cation Antiporters (CaCA): Identification, Characterization and Expression Profiling in Bread Wheat (Triticum aestivum L.)
- (2016) Mehak Taneja et al. Frontiers in Plant Science
- The Plant Heat Stress Transcription Factors (HSFs): Structure, Regulation, and Function in Response to Abiotic Stresses
- (2016) Meng Guo et al. Frontiers in Plant Science
- Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs)
- (2016) Shumayla et al. Frontiers in Plant Science
- Recent Advances in Utilizing Transcription Factors to Improve Plant Abiotic Stress Tolerance by Transgenic Technology
- (2016) Hongyan Wang et al. Frontiers in Plant Science
- Molecular Characterization and Global Expression Analysis of Lectin Receptor Kinases in Bread Wheat (Triticum aestivum)
- (2016) Shumayla et al. PLoS One
- Expression partitioning of homeologs and tandem duplications contribute to salt tolerance in wheat (Triticum aestivum L.)
- (2016) Yumei Zhang et al. Scientific Reports
- Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer
- (2016) Wenting Wu et al. Scientific Reports
- Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development
- (2016) Niraj Khemka et al. Scientific Reports
- Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma
- (2015) Yibin Hao et al. BMC CANCER
- Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize
- (2015) Chunyan Fan et al. BMC GENOMICS
- Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development
- (2015) Chunying Kang et al. BMC GENOMICS
- Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)
- (2015) Zhenshan Liu et al. BMC PLANT BIOLOGY
- Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing
- (2015) Tian-Zuo Wang et al. BMC PLANT BIOLOGY
- Discovery and annotation of long noncoding RNAs
- (2015) John S Mattick et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Long noncoding RNA transcriptome of plants
- (2015) Jun Liu et al. PLANT BIOTECHNOLOGY JOURNAL
- Battles and hijacks: noncoding transcription in plants
- (2015) Federico Ariel et al. TRENDS IN PLANT SCIENCE
- Discovery and annotation of long noncoding RNAs
- (2015) John S Mattick et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome
- (2015) Lise Pingault et al. GENOME BIOLOGY
- Genome-Wide Identification, Characterization and Evolutionary Analysis of Long Intergenic Noncoding RNAs in Cucumber
- (2015) Zhiqiang Hao et al. PLoS One
- Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection
- (2015) Jinyan Wang et al. Scientific Reports
- The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
- (2014) Thomas R. Cech et al. CELL
- Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis
- (2014) Florian Bardou et al. DEVELOPMENTAL CELL
- Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa
- (2014) Peng Shuai et al. JOURNAL OF EXPERIMENTAL BOTANY
- Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features
- (2014) Chao Di et al. PLANT JOURNAL
- Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA
- (2014) Markus Wunderlich et al. PLANT MOLECULAR BIOLOGY
- Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress
- (2014) Wei Zhang et al. PLoS One
- Genome-Wide Identification and Characterization of Long Intergenic Non-Coding RNAs in Ganoderma lucidum
- (2014) Jianqin Li et al. PLoS One
- Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light
- (2014) Y. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ancient hybridizations among the ancestral genomes of bread wheat
- (2014) T. Marcussen et al. SCIENCE
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
- (2014) et al. SCIENCE
- Rising temperatures reduce global wheat production
- (2014) S. Asseng et al. Nature Climate Change
- Reduced miR-3127-5p expression promotes NSCLC proliferation/invasion and contributes to dasatinib sensitivity via the c-Abl/Ras/ERK pathway
- (2014) Yifeng Sun et al. Scientific Reports
- Genome-wide discovery and characterization of maize long non-coding RNAs
- (2014) Lin Li et al. GENOME BIOLOGY
- lincRNAs: Genomics, Evolution, and Mechanisms
- (2013) Igor Ulitsky et al. CELL
- Role of Homeodomain Leucine Zipper (HD-Zip) IV Transcription Factors in Plant Development and Plant Protection from Deleterious Environmental Factors
- (2013) William Chew et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses
- (2013) Søren Lindemose et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
- (2013) Per Johnsson et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function
- (2013) Petr V. Nazarov et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness
- (2013) M. Jabnoune et al. PLANT CELL
- Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants
- (2013) H.-J. Wu et al. PLANT PHYSIOLOGY
- Genome Regulation by Long Noncoding RNAs
- (2012) John L. Rinn et al. Annual Review of Biochemistry
- Serpins in rice: protein sequence analysis, phylogeny and gene expression during development
- (2012) Sheila E Francis et al. BMC GENOMICS
- Wheat Subtilisin/Chymotrypsin Inhibitor (WSCI) as a scaffold for novel serine protease inhibitors with a given specificity
- (2012) Francesca Tedeschi et al. Molecular BioSystems
- Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks
- (2012) Xingli Guo et al. NUCLEIC ACIDS RESEARCH
- DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
- (2012) Maria D. Paraskevopoulou et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis
- (2012) J. Liu et al. PLANT CELL
- A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
- (2012) J. Ding et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation
- (2012) Philippe Julien et al. PLOS BIOLOGY
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing
- (2011) Mingming Xin et al. BMC PLANT BIOLOGY
- ncFANs: a web server for functional annotation of long non-coding RNAs
- (2011) Q. Liao et al. NUCLEIC ACIDS RESEARCH
- psRNATarget: a plant small RNA target analysis server
- (2011) Xinbin Dai et al. NUCLEIC ACIDS RESEARCH
- The RLK/Pelle family of kinases
- (2011) Lindsey A. Gish et al. PLANT JOURNAL
- Regulation of Gene Expression in Plants through miRNA Inactivation
- (2011) Sergey Ivashuta et al. PLoS One
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Long noncoding RNA: unveiling hidden layer of gene regulatory networks
- (2011) Eun-Deok Kim et al. TRENDS IN PLANT SCIENCE
- Genomewide characterization of non-polyadenylated RNAs
- (2011) Li Yang et al. GENOME BIOLOGY
- agriGO: a GO analysis toolkit for the agricultural community
- (2010) Zhou Du et al. NUCLEIC ACIDS RESEARCH
- Mechanism of Auxin-Regulated Gene Expression in Plants
- (2009) Elisabeth J. Chapman et al. Annual Review of Genetics
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Computational prediction of novel non-coding RNAs in Arabidopsis thaliana
- (2009) Dandan Song et al. BMC BIOINFORMATICS
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
- (2009) Mitchell Guttman et al. NATURE
- Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells
- (2009) Satohiro Okuda et al. NATURE
- Arabidopsis SBP-Box Genes SPL10, SPL11 and SPL2 Control Morphological Change in Association with Shoot Maturation in the Reproductive Phase
- (2009) Masahito Shikata et al. PLANT AND CELL PHYSIOLOGY
- Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
- (2009) Ahmad M. Khalil et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses
- (2008) Nelson J. M. Saibo et al. ANNALS OF BOTANY
- Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes
- (2008) Andrzej T. Wierzbicki et al. CELL
- Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
- (2008) B. Ben Amor et al. GENOME RESEARCH
- Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize
- (2008) Jinxia Ma et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Diamonds in the rough: mRNA-like non-coding RNAs
- (2008) Linda A. Rymarquis et al. TRENDS IN PLANT SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started