Interplay of microRNAs, transcription factors and target genes: linking dynamic expression changes to function

microRNA involvement in human cancer

(2012) M. V. Iorio et al.   CARCINOGENESIS

Roles for MicroRNAs in Conferring Robustness to Biological Processes

(2012) Margaret S. Ebert et al.   CELL

Circuitry and Dynamics of Human Transcription Factor Regulatory Networks

(2012) Shane Neph et al.   CELL

Interferon-γ-induced activation of Signal Transducer and Activator of Transcription 1 (STAT1) up-regulates the tumor suppressing microRNA-29 family in melanoma cells

(2012) Martina J Schmitt et al.   Cell Communication and Signaling

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

Studying and modelling dynamic biological processes using time-series gene expression data

(2012) Ziv Bar-Joseph et al.   NATURE REVIEWS GENETICS

Integrative analysis of gene and miRNA expression profiles with transcription factor–miRNA feed-forward loops identifies regulators in human cancers

(2012) Zhenyu Yan et al.   NUCLEIC ACIDS RESEARCH

Dynamic regulation of microRNA expression following Interferon-γ-induced gene transcription

(2012) Susanne Reinsbach et al.   RNA Biology

Kinetic signatures of microRNA modes of action

(2012) N. Morozova et al.   RNA

Interplay between gene expression noise and regulatory network architecture

(2012) Guilhem Chalancon et al.   TRENDS IN GENETICS

Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma

(2012) Jingchun Sun et al.   PLoS Computational Biology

Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma

(2011) S. Landreville et al.   CLINICAL CANCER RESEARCH

Influence of single nucleotide polymorphisms in the MMP1 promoter region on cutaneous melanoma progression

(2011) Hongliang Liu et al.   MELANOMA RESEARCH

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

(2011) T. Vergoulis et al.   NUCLEIC ACIDS RESEARCH

Analysis of microRNA turnover in mammalian cells following Dicer1 ablation

(2011) Michael P. Gantier et al.   NUCLEIC ACIDS RESEARCH

Temporal expression of miRNAs and mRNAs in a mouse model of myocardial infarction

(2011) J. David Port et al.   PHYSIOLOGICAL GENOMICS

MicroRNA as biomarkers and regulators in B-cell chronic lymphocytic leukemia

(2011) E. Moussay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inflammatory cytokines regulate microRNA-155 expression in human retinal pigment epithelial cells by activating JAK/STAT pathway

(2010) R. Krishnan Kutty et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Principal network analysis: identification of subnetworks representing major dynamics using gene expression data

(2010) Yongsoo Kim et al.   BIOINFORMATICS

Prognostic transcriptional association networks: a new supervised approach based on regression trees

(2010) Isabel Nepomuceno-Chamorro et al.   BIOINFORMATICS

Merged consensus clustering to assess and improve class discovery with microarray data

(2010) T Ian Simpson et al.   BMC BIOINFORMATICS

Global analysis of phase locking in gene expression during cell cycle: the potential in network modeling

(2010) Shouguo Gao et al.   BMC Systems Biology

Signatures of MicroRNAs and Selected MicroRNA Target Genes in Human Melanoma

(2010) D. Philippidou et al.   CANCER RESEARCH

MicroRNAs in malignant progression

(2010) Li Ma et al.   CELL CYCLE

Signal transducer and activator of transcription 3-mediated regulation of miR-199a-5p links cardiomyocyte and endothelial cell function in the heart: a key role for ubiquitin-conjugating enzymes

(2010) Arash Haghikia et al.   EUROPEAN HEART JOURNAL

STAT3 Activation of miR-21 and miR-181b-1 via PTEN and CYLD Are Part of the Epigenetic Switch Linking Inflammation to Cancer

(2010) Dimitrios Iliopoulos et al.   MOLECULAR CELL

Sox proteins in melanocyte development and melanoma

(2010) Melissa L. Harris et al.   Pigment Cell & Melanoma Research

Signal Transducers and Activators of Transcription-1 (STAT1) Regulates microRNA Transcription in Interferon γ-Stimulated HeLa Cells

(2010) Guohua Wang et al.   PLoS One

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line

(2010) Michael James Clark et al.   PLoS Genetics

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)

(2009) Martin J Aryee et al.   BMC BIOINFORMATICS

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation

(2009) Sebastian Schmeier et al.   BMC GENOMICS

MicroRNAs: Novel Biomarkers for Human Cancer

(2009) C. L. Bartels et al.   CLINICAL CHEMISTRY

Gene modulation and immunoregulatory roles of Interferonγ

(2009) Banishree Saha et al.   CYTOKINE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Many roads to maturity: microRNA biogenesis pathways and their regulation

(2009) Julia Winter et al.   NATURE CELL BIOLOGY

Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data

(2009) V. Jayaswal et al.   NUCLEIC ACIDS RESEARCH

COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer

(2009) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

A Gene Expression Signature of Invasive Potential in Metastatic Melanoma Cells

(2009) Aaron R. Jeffs et al.   PLoS One

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

MicroRNAs and the skin: Tiny players in the body's largest organ

(2008) Michael Sand et al.   JOURNAL OF DERMATOLOGICAL SCIENCE

The expanding world of small RNAs

(2008) Helge Großhans et al.   NATURE