miRNAFold: a web server for fast miRNA precursor prediction in genomes

Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams

(2015) Peter Kerpedjiev et al.   BIOINFORMATICS

Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data

(2015) Susan Higashi et al.   BMC BIOINFORMATICS

miRBoost: boosting support vector machines for microRNA precursor classification

(2015) Van Du T. Tran et al.   RNA

ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins

(2012) Sébastien Tempel et al.   BMC BIOINFORMATICS

A fast ab-initio method for predicting miRNA precursors in genomes

(2012) Sébastien Tempel et al.   NUCLEIC ACIDS RESEARCH

MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences

(2011) Yonggan Wu et al.   BMC BIOINFORMATICS

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)

(2010) Sumeet Agarwal et al.   BMC BIOINFORMATICS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

CID-miRNA: A web server for prediction of novel miRNA precursors in human genome

(2008) Sonika Tyagi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS