Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice

Construction of regulatory networks mediated by small RNAs responsive to abiotic stresses in rice (Oryza sativa)

(2015) Jingping Qin et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Role of microRNAs in plant drought tolerance

(2015) Jannatul Ferdous et al.   PLANT BIOTECHNOLOGY JOURNAL

The soluble ABA receptor PYL8 regulates drought resistance by controlling ABA signaling in Arabidopsis

(2015) Han Yong Lee et al.   Plant Biotechnology Reports

OsbZIP23 and OsbZIP45, members of the rice basic leucine zipper transcription factor family, are involved in drought tolerance

(2015) Su-Hyun Park et al.   Plant Biotechnology Reports

Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants

(2015) Daisuke Todaka et al.   Frontiers in Plant Science

A Key ABA Catabolic Gene, OsABA8ox3, Is Involved in Drought Stress Resistance in Rice

(2015) Shanlan Cai et al.   PLoS One

Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data

(2014) Cheng-Yu Hou et al.   BMC GENOMICS

ABA-dependent and ABA-independent signaling in response to osmotic stress in plants

(2014) Takuya Yoshida et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

(2014) H. Wang et al.   GENOME RESEARCH

Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation

(2014) S. Campo et al.   PLANT PHYSIOLOGY

Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress

(2014) Wei Zhang et al.   PLoS One

Genome-wide discovery and characterization of maize long non-coding RNAs

(2014) Lin Li et al.   GENOME BIOLOGY

RNA-sequencing reveals previously unannotated protein- and microRNA-coding genes expressed in aleurone cells of rice seeds

(2013) Kenneth A. Watanabe et al.   GENOMICS

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of rice microRNAs in abiotic stress responses

(2013) Dong-Hoon Jeong et al.   JOURNAL OF PLANT BIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Posttranscriptional Control of Photosynthetic mRNA Decay under Stress Conditions Requires 3' and 5' Untranslated Regions and Correlates with Differential Polysome Association in Rice

(2012) S.-H. Park et al.   PLANT PHYSIOLOGY

The Influence of Climate Change on Global Crop Productivity

(2012) D. B. Lobell et al.   PLANT PHYSIOLOGY

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

Experimental strategies for microRNA target identification

(2011) D. W. Thomson et al.   NUCLEIC ACIDS RESEARCH

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

Long noncoding RNA: unveiling hidden layer of gene regulatory networks

(2011) Eun-Deok Kim et al.   TRENDS IN PLANT SCIENCE

Viral Infection Induces Expression of Novel Phased MicroRNAs from Conserved Cellular MicroRNA Precursors

(2011) Peng Du et al.   PLoS Pathogens

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Subcellular localization of rice histone deacetylases in organelles

(2009) Pil Joong Chung et al.   FEBS LETTERS

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

Climate change impacts on crop yield, crop water productivity and food security – A review

(2009) Yinhong Kang et al.   Progress in Natural Science-Materials International

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA