MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni

MicroRNAs Are Involved in the Regulation of Ovary Development in the Pathogenic Blood Fluke Schistosoma japonicum

(2016) Lihui Zhu et al.   PLoS Pathogens

HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni

(2016) Sutas Suttiprapa et al.   PLoS Pathogens

High-throughput characterization of Echinococcus spp. metacestode miRNomes

(2015) Marcela Cucher et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

RSAT 2015: Regulatory Sequence Analysis Tools

(2015) Alejandra Medina-Rivera et al.   NUCLEIC ACIDS RESEARCH

Knocking down schistosomes – promise for lentiviral transduction in parasites

(2015) Jana Hagen et al.   TRENDS IN PARASITOLOGY

Suppression of the Insulin Receptors in Adult Schistosoma japonicum Impacts on Parasite Growth and Development: Further Evidence of Vaccine Potential

(2015) Hong You et al.   PLoS Neglected Tropical Diseases

The Schistosome Esophagus Is a ‘Hotspot’ for Microexon and Lysosomal Hydrolase Gene Expression: Implications for Blood Processing

(2015) R. Alan Wilson et al.   PLoS Neglected Tropical Diseases

Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq

(2015) Letícia Anderson et al.   PLoS Neglected Tropical Diseases

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Novel expression profiles of microRNAs suggest that specific miRNAs regulate gene expression for the sexual maturation of female Schistosoma japonicum after pairing

(2014) Jun Sun et al.   Parasites & Vectors

The anterior esophageal region of Schistosoma japonicum is a secretory organ

(2014) Xiao Hong Li et al.   Parasites & Vectors

Pseudotyped murine leukemia virus for schistosome transgenesis: approaches, methods and perspectives

(2014) Victoria H. Mann et al.   TRANSGENIC RESEARCH

How might flukes and tapeworms maintain genome integrity without a canonical piRNA pathway?

(2014) Danielle E. Skinner et al.   TRENDS IN PARASITOLOGY

Parasite-Derived MicroRNAs in Host Serum As Novel Biomarkers of Helminth Infection

(2014) Anna M. Hoy et al.   PLoS Neglected Tropical Diseases

Comparative analysis of known miRNAs across platyhelminths

(2013) Xiaoliang Jin et al.   FEBS Journal

Kraken: A set of tools for quality control and analysis of high-throughput sequence data

(2013) Matthew P.A. Davis et al.   METHODS

Substantial Loss of Conserved and Gain of Novel MicroRNA Families in Flatworms

(2013) Bastian Fromm et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adult somatic stem cells in the human parasite Schistosoma mansoni

(2013) James J. Collins III et al.   NATURE

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

A Deep Analysis of the Small Non-Coding RNA Population in Schistosoma japonicum Eggs

(2013) Pengfei Cai et al.   PLoS One

Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea

(2013) V. Sasidharan et al.   RNA

Comparative Study of Transcriptome Profiles of Mechanical- and Skin-Transformed Schistosoma mansoni Schistosomula

(2013) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

Sex-Biased Expression of MicroRNAs in Schistosoma mansoni

(2013) Antonio Marco et al.   PLoS Neglected Tropical Diseases

The Schistosome Oesophageal Gland: Initiator of Blood Processing

(2013) Xiao-Hong Li et al.   PLoS Neglected Tropical Diseases

Proteomics at the schistosome-mammalian host interface: any prospects for diagnostics or vaccines?

(2012) R. ALAN WILSON   PARASITOLOGY

Large-Scale Identification of MicroRNA Targets in Murine Dgcr8-Deficient Embryonic Stem Cell Lines

(2012) Matthew P. A. Davis et al.   PLoS One

Identification and Characterization of Argonaute Protein, Ago2 and Its Associated Small RNAs in Schistosoma japonicum

(2012) Pengfei Cai et al.   PLoS Neglected Tropical Diseases

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Identification of Schistosoma mansoni microRNAs

(2011) Mariana C Simões et al.   BMC GENOMICS

Argonaute proteins

(2011) Elif Sarinay Cenik et al.   CURRENT BIOLOGY

Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni

(2011) Matheus de Souza Gomes et al.   GENOMICS

Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes

(2011) M. Cucher et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

(2011) David M Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Gene Expression Patterns in Larval Schistosoma mansoni Associated with Infection of the Mammalian Host

(2011) Sophia J. Parker-Manuel et al.   PLoS Neglected Tropical Diseases

Profiles of Small Non-Coding RNAs in Schistosoma japonicum during Development

(2011) Pengfei Cai et al.   PLoS Neglected Tropical Diseases

Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum

(2010) Lili Hao et al.   BMC GENOMICS

Malignant Germ Cell Tumors Display Common MicroRNA Profiles Resulting in Global Changes in Expression of Messenger RNA Targets

(2010) Roger D. Palmer et al.   CANCER RESEARCH

Transduction of Schistosoma japonicum schistosomules with vesicular stomatitis virus glycoprotein pseudotyped murine leukemia retrovirus and expression of reporter human telomerase reverse transcriptase in the transgenic schistosomes

(2010) Shenghui Yang et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans

(2010) Alejandra M. Clark et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

An “In-Depth” Description of the Small Non-coding RNA Population of Schistosoma japonicum Schistosomulum

(2010) Zhangxun Wang et al.   PLoS Neglected Tropical Diseases

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum

(2009) Claudia C Copeland et al.   BMC GENOMICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

A planarian p53 homolog regulates proliferation and self-renewal in adult stem cell lineages

(2009) Bret J. Pearson et al.   DEVELOPMENT

Characterization of phosphodiesterase-5 as a surface protein in the tegument of Schistosoma mansoni

(2009) Henrique K. Rofatto et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice

(2009) Morag A Lewis et al.   NATURE GENETICS

Culture for genetic manipulation of developmental stages of Schistosoma mansoni

(2009) VICTORIA H. MANN et al.   PARASITOLOGY

A wake up call for urinary schistosomiasis: reconciling research effort with public health importance

(2009) D. ROLLINSON   PARASITOLOGY

The saga of schistosome migration and attrition

(2009) R. A. WILSON   PARASITOLOGY

Fluorescent Imaging of Antigen Released by a Skin-Invading Helminth Reveals Differential Uptake and Activation Profiles by Antigen Presenting Cells

(2009) Ross A. Paveley et al.   PLoS Neglected Tropical Diseases

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Detecting microRNA binding and siRNA off-target effects from expression data

(2008) Stijn van Dongen et al.   NATURE METHODS

Preliminary analysis of miRNA pathway in Schistosoma mansoni

(2008) Matheus S. Gomes et al.   PARASITOLOGY INTERNATIONAL

Identification and Characterization of Novel MicroRNAs from Schistosoma japonicum

(2008) Xiangyang Xue et al.   PLoS One

The NIH-NIAID Schistosomiasis Resource Center

(2008) Fred A. Lewis et al.   PLoS Neglected Tropical Diseases

Proteomic Analysis of Skin Invasion by Blood Fluke Larvae

(2008) Elizabeth Hansell et al.   PLoS Neglected Tropical Diseases