Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq

Repurposing apoptosis-inducing cancer drugs to treat schistosomiasis

(2015) Erinna F Lee et al.   Future Medicinal Chemistry

How Hsp70 Molecular Machines Interact with Their Substrates to Mediate Diverse Physiological Functions

(2015) Eugenia M. Clerico et al.   JOURNAL OF MOLECULAR BIOLOGY

The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection

(2015) David Roquis et al.   PLoS Neglected Tropical Diseases

Navigating protected genomics data with UCSC Genome Browser in a Box

(2014) M. Haeussler et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata)

(2014) Yu Shi et al.   GENE

Human schistosomiasis

(2014) Daniel G Colley et al.   LANCET

Transcriptional profiling of the oesophageal gland region of male worms of Schistosoma mansoni

(2014) Sujeevi S.K. Nawaratna et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

(2014) Charles Wang et al.   NATURE BIOTECHNOLOGY

Schistosomes versus platelets

(2014) Akram A. Da’dara et al.   THROMBOSIS RESEARCH

Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni

(2014) David Roquis et al.   Frontiers in Genetics

Long non-coding RNAs and their implications in cancer epigenetics

(2013) Felipe C. Beckedorff et al.   BIOSCIENCE REPORTS

Exploring Valid Reference Genes for Quantitative Real-time PCR Analysis in Plutella xylostella (Lepidoptera: Plutellidae)

(2013) Wei Fu et al.   International Journal of Biological Sciences

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Combinatory Microarray and SuperSAGE Analyses Identify Pairing-Dependently Transcribed Genes in Schistosoma mansoni Males, Including Follistatin

(2013) Silke Leutner et al.   PLoS Neglected Tropical Diseases

The Schistosome Oesophageal Gland: Initiator of Blood Processing

(2013) Xiao-Hong Li et al.   PLoS Neglected Tropical Diseases

Interference with the Host Haemostatic System by Schistosomes

(2013) Mirjam M. Mebius et al.   PLoS Pathogens

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Combination of de novo assembly of massive sequencing reads with classical repeat prediction improves identification of repetitive sequences in Schistosoma mansoni

(2012) Julie M.J. Lepesant et al.   EXPERIMENTAL PARASITOLOGY

CD36-related protein in Schistosoma japonicum: candidate mediator of selective cholesteryl ester uptake from high-density lipoprotein for egg maturation

(2012) Kuniko Okumura-Noji et al.   FASEB JOURNAL

Schistosomiasis

(2012) Bruno Gryseels   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

Metabolite movement across the schistosome surface

(2012) A. Da'dara et al.   JOURNAL OF HELMINTHOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

(2012) Hai Fang et al.   NUCLEIC ACIDS RESEARCH

Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features

(2012) Hiroaki Iwata et al.   NUCLEIC ACIDS RESEARCH

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

Non-coding RNAs in schistosomes: an unexplored world

(2011) Katia C Oliveira et al.   ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

The ancient cell death suppressor BAX inhibitor-1

(2011) Nadine Henke et al.   CELL CALCIUM

Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq

(2011) Giulliana Tessarin Almeida et al.   EXPERIMENTAL PARASITOLOGY

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

From unwinding to clamping — the DEAD box RNA helicase family

(2011) Patrick Linder et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Function of Cytosolic Chaperones in Tom70-Mediated Mitochondrial Import

(2011) Anna C.Y. Fan et al.   PROTEIN AND PEPTIDE LETTERS

Enzymatic Shaving of the Tegument Surface of Live Schistosomes for Proteomic Analysis: A Rational Approach to Select Vaccine Candidates

(2011) William Castro-Borges et al.   PLoS Neglected Tropical Diseases

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts

(2010) R. DeMarco et al.   GENOME RESEARCH

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

Molecular characterisation of kappa-5, a major antigenic glycoprotein from Schistosoma mansoni eggs

(2009) G. Schramm et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

MEIG1 is essential for spermiogenesis in mice

(2009) Z. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

Schistosoma mansoni: SmE78, a nuclear receptor orthologue of Drosophila ecdysone-induced protein 78

(2008) Wenjie Wu et al.   EXPERIMENTAL PARASITOLOGY