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Title
RSAT 2015: Regulatory Sequence Analysis Tools
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 43, Issue W1, Pages W50-W56
Publisher
Oxford University Press (OUP)
Online
2015-04-23
DOI
10.1093/nar/gkv362
References
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Related references
Note: Only part of the references are listed.- footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
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- (2012) X. Li et al. GENOME RESEARCH
- A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
- (2012) Morgane Thomas-Chollier et al. Nature Protocols
- RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
- (2012) Heladia Salgado et al. NUCLEIC ACIDS RESEARCH
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
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- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl
- (2009) O. Sand et al. BIOINFORMATICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
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- Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services—an example with ChIP-chip data
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- Network Analysis Tools: from biological networks to clusters and pathways
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- Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules
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