The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics
Authors
Keywords
-
Journal
MOLECULAR & CELLULAR PROTEOMICS
Volume 16, Issue 7, Pages 1275-1285
Publisher
American Society for Biochemistry & Molecular Biology (ASBMB)
Online
2017-05-18
DOI
10.1074/mcp.m117.068429
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines
- (2016) Alexander Leitner et al. TRENDS IN BIOCHEMICAL SCIENCES
- ms-data-core-api: an open-source, metadata-oriented library for computational proteomics: Fig. 1.
- (2015) Yasset Perez-Riverol et al. BIOINFORMATICS
- PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface
- (2015) Julian Uszkoreit et al. JOURNAL OF PROTEOME RESEARCH
- ProCon — PROteomics CONversion tool
- (2015) Gerhard Mayer et al. Journal of Proteomics
- Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology
- (2015) Adam Belsom et al. MOLECULAR & CELLULAR PROTEOMICS
- PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
- (2015) Yasset Perez-Riverol et al. MOLECULAR & CELLULAR PROTEOMICS
- PeptideShaker enables reanalysis of MS-derived proteomics data sets
- (2015) Marc Vaudel et al. NATURE BIOTECHNOLOGY
- Representation of selected-reaction monitoring data in the mzQuantML data standard
- (2015) Da Qi et al. PROTEOMICS
- Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop
- (2015) Andrej Sali et al. STRUCTURE
- The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
- (2014) Johannes Griss et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteogenomics: concepts, applications and computational strategies
- (2014) Alexey I Nesvizhskii NATURE METHODS
- How to submit MS proteomics data to ProteomeXchange via the PRIDE database
- (2014) Tobias Ternent et al. PROTEOMICS
- A standardized framing for reporting protein identifications in mzIdentML 1.2
- (2014) Sean L. Seymour et al. PROTEOMICS
- ProteoAnnotator - Open source proteogenomics annotation software supporting PSI standards
- (2014) Fawaz Ghali et al. PROTEOMICS
- MS-GF+ makes progress towards a universal database search tool for proteomics
- (2014) Sangtae Kim et al. Nature Communications
- The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
- (2013) Mathias Walzer et al. MOLECULAR & CELLULAR PROTEOMICS
- Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML
- (2013) Fawaz Ghali et al. MOLECULAR & CELLULAR PROTEOMICS
- Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification
- (2013) Michael J. Trnka et al. MOLECULAR & CELLULAR PROTEOMICS
- The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
- (2013) G. Mayer et al. Database-The Journal of Biological Databases and Curation
- Mass Spectrometry: Reconnaissance at the Frontiers of Biology
- (2012) Alma L. Burlingame et al. MOLECULAR & CELLULAR PROTEOMICS
- Modification Site Localization Scoring: Strategies and Performance
- (2012) Robert J. Chalkley et al. MOLECULAR & CELLULAR PROTEOMICS
- A cross-platform toolkit for mass spectrometry and proteomics
- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data
- (2012) Florian Reisinger et al. PROTEOMICS
- iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
- (2011) David Shteynberg et al. MOLECULAR & CELLULAR PROTEOMICS
- Hierarchical Clustering of Shotgun Proteomics Data
- (2011) Ville R. Koskinen et al. MOLECULAR & CELLULAR PROTEOMICS
- PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification
- (2011) Jing Zhang et al. MOLECULAR & CELLULAR PROTEOMICS
- mzML—a Community Standard for Mass Spectrometry Data
- (2010) Lennart Martens et al. MOLECULAR & CELLULAR PROTEOMICS
- Scaffold: A bioinformatic tool for validating MS/MS-based proteomic studies
- (2010) Brian C. Searle PROTEOMICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- The PSI semantic validator: A framework to check MIAPE compliance of proteomics data
- (2009) Luisa Montecchi-Palazzi et al. PROTEOMICS
- Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
- (2009) Andrew R. Jones et al. PROTEOMICS
- Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
- (2008) Brian C. Searle et al. JOURNAL OF PROTEOME RESEARCH
- Rapid and Accurate Peptide Identification from Tandem Mass Spectra
- (2008) Christopher Y. Park et al. JOURNAL OF PROTEOME RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More