How to submit MS proteomics data to ProteomeXchange via the PRIDE database
Published 2014 View Full Article
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Title
How to submit MS proteomics data to ProteomeXchange via the PRIDE database
Authors
Keywords
-
Journal
PROTEOMICS
Volume 14, Issue 20, Pages 2233-2241
Publisher
Wiley
Online
2014-07-22
DOI
10.1002/pmic.201400120
References
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Related references
Note: Only part of the references are listed.- MS-Viewer: A Web-based Spectral Viewer for Proteomics Results
- (2014) Peter R. Baker et al. MOLECULAR & CELLULAR PROTEOMICS
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- The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
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- (2013) Fawaz Ghali et al. MOLECULAR & CELLULAR PROTEOMICS
- PAnalyzer: A software tool for protein inference in shotgun proteomics
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- Pepitome: Evaluating Improved Spectral Library Search for Identification Complementarity and Quality Assessment
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- EasyProt — An easy-to-use graphical platform for proteomics data analysis
- (2012) Florent Gluck et al. Journal of Proteomics
- The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
- (2012) Richard G. Côté et al. MOLECULAR & CELLULAR PROTEOMICS
- The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
- (2012) Andrew R. Jones et al. MOLECULAR & CELLULAR PROTEOMICS
- PRIDE Inspector: a tool to visualize and validate MS proteomics data
- (2012) Rui Wang et al. NATURE BIOTECHNOLOGY
- The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
- (2012) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
- PASSEL: The PeptideAtlas SRMexperiment library
- (2012) Terry Farrah et al. PROTEOMICS
- PRIDE: Quality control in a proteomics data repository
- (2012) A. Csordas et al. Database-The Journal of Biological Databases and Curation
- The ProteoRed MIAPE web toolkit: A User-friendly Framework to Connect and Share Proteomics Standards
- (2011) J. Alberto Medina-Aunon et al. MOLECULAR & CELLULAR PROTEOMICS
- Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)
- (2011) Christopher R. Kinsinger et al. PROTEOMICS
- A posteriori quality control for the curation and reuse of public proteomics data
- (2011) Joseph M. Foster et al. PROTEOMICS
- TagRecon: High-Throughput Mutation Identification through Sequence Tagging
- (2010) Surendra Dasari et al. JOURNAL OF PROTEOME RESEARCH
- The Ontology Lookup Service: bigger and better
- (2010) R. Cote et al. NUCLEIC ACIDS RESEARCH
- The Proteios Software Environment: An Extensible Multiuser Platform for Management and Analysis of Proteomics Data
- (2009) Jari Häkkinen et al. JOURNAL OF PROTEOME RESEARCH
- IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering
- (2009) Ze-Qiang Ma et al. JOURNAL OF PROTEOME RESEARCH
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- OpenMS – An open-source software framework for mass spectrometry
- (2008) Marc Sturm et al. BMC BIOINFORMATICS
- PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
- (2008) Eric W Deutsch et al. EMBO REPORTS
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