Representation of selected-reaction monitoring data in the mzQuantML data standard

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

The jmzQuantML programming interface and validator for the mzQuantML data standard

(2014) Da Qi et al.   PROTEOMICS

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics

(2013) Mathias Walzer et al.   MOLECULAR & CELLULAR PROTEOMICS

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

(2013) G. Mayer et al.   Database-The Journal of Biological Databases and Curation

Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification

(2012) Johan Teleman et al.   JOURNAL OF PROTEOME RESEARCH

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

(2012) Andrew R. Jones et al.   MOLECULAR & CELLULAR PROTEOMICS

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

(2012) Paola Picotti et al.   NATURE METHODS

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

PASSEL: The PeptideAtlas SRMexperiment library

(2012) Terry Farrah et al.   PROTEOMICS

The use of selected reaction monitoring in quantitative proteomics

(2012) Stephen W Holman et al.   Bioanalysis

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists

(2011) Eric W. Deutsch et al.   MOLECULAR & CELLULAR PROTEOMICS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

mzML—a Community Standard for Mass Spectrometry Data

(2010) Lennart Martens et al.   MOLECULAR & CELLULAR PROTEOMICS