The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

(2013) G. Mayer et al.   Database-The Journal of Biological Databases and Curation

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

(2012) Andrew R. Jones et al.   MOLECULAR & CELLULAR PROTEOMICS

A Critical Appraisal of Techniques, Software Packages, and Standards for Quantitative Proteomic Analysis

(2012) Faviel F. Gonzalez-Galarza et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

A Software Toolkit and Interface for Performing Stable Isotope Labeling and Top3 Quantification Using Progenesis LC-MS

(2012) Da Qi et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Ten Years of Standardizing Proteomic Data: A Report on the HUPO-PSI Spring Workshop

(2012) Sandra Orchard et al.   PROTEOMICS

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists

(2011) Eric W. Deutsch et al.   MOLECULAR & CELLULAR PROTEOMICS

Enabling BioSharing - a report on the Annual Spring Workshop of the HUPO-PSI April 11-13, 2011, EMBL-Heidelberg, Germany

(2011) Sandra Orchard et al.   PROTEOMICS

Quality meets quantity - quality control, data standards and repositories

(2011) Martin Eisenacher et al.   PROTEOMICS

Proteomics data repositories: Providing a safe haven for your data and acting as a springboard for further research

(2010) Juan Antonio Vizcaíno et al.   Journal of Proteomics

mzML—a Community Standard for Mass Spectrometry Data

(2010) Lennart Martens et al.   MOLECULAR & CELLULAR PROTEOMICS

Tackling Quantitation: A Report on the Annual Spring Workshop of the HUPO-PSI 28-30 March 2010, Seoul, South Korea

(2010) Sandra Orchard et al.   PROTEOMICS

The Proteomics Identifications database: 2010 update

(2009) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY