Predicting Amyloidogenic Proteins in the Proteomes of Plants

The Proteins API: accessing key integrated protein and genome information

(2017) Andrew Nightingale et al.   NUCLEIC ACIDS RESEARCH

Amyloids and prions in plants: Facts and perspectives

(2017) K. S. Antonets et al.   Prion

HPSLPred: An Ensemble Multi-Label Classifier for Human Protein Subcellular Location Prediction with Imbalanced Source

(2017) Shixiang Wan et al.   PROTEOMICS

The propensity of the bacterial rodlin protein RdlB to form amyloid fibrils determines its function in Streptomyces coelicolor

(2017) Wen Yang et al.   Scientific Reports

Proteomic analysis of Escherichia coli protein fractions resistant to solubilization by ionic detergents

(2016) K. S. Antonets et al.   BIOCHEMISTRY-MOSCOW

Hevea brasiliensis prohevein possesses a conserved C-terminal domain with amyloid-like properties in vitro

(2016) Karine Berthelot et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Antimicrobial peptide (Cn-AMP2) from liquid endosperm ofCocos nuciferaforms amyloid-like fibrillar structure

(2016) Shalini Gour et al.   JOURNAL OF PEPTIDE SCIENCE

Prions, amyloids, and RNA: Pieces of a puzzle

(2016) Anton A. Nizhnikov et al.   Prion

Luminidependens (LD) is an Arabidopsis protein with prion behavior

(2016) Sohini Chakrabortee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Properties of Gluten Intolerance: Gluten Structure, Evolution, Pathogenicity and Detoxification Capabilities

(2016) Anastasia Balakireva et al.   Nutrients

Amyloid-like ribbons of amelogenins in enamel mineralization

(2016) Karina M. M. Carneiro et al.   Scientific Reports

Interaction of Prions Causes Heritable Traits in Saccharomyces cerevisiae

(2016) Anton A. Nizhnikov et al.   PLoS Genetics

Identification of DEP domain-containing proteins by a machine learning method and experimental analysis of their expression in human HCC tissues

(2016) Zhijun Liao et al.   Scientific Reports

Amyloids: from pathogenesis to function

(2015) A. A. Nizhnikov et al.   BIOCHEMISTRY-MOSCOW

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides

(2015) J. Beerten et al.   BIOINFORMATICS

Outer membrane protein C (OmpC) of Escherichia coli induces neurodegeneration in mice by acting as an amyloid

(2015) J. Joseph Sahaya Rajan et al.   BIOTECHNOLOGY LETTERS

The Tubular Sheaths EncasingMethanosaeta thermophilaFilaments Are Functional Amyloids

(2015) Morten S. Dueholm et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Yeast Prions: Structure, Biology, and Prion-Handling Systems

(2015) Reed B. Wickner et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Effect of amyloids on the vesicular machinery: implications for somatic neurotransmission

(2015) Anand Kant Das et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

YCF1: A Green TIC?

(2015) Jan de Vries et al.   PLANT CELL

Aqueous, Unfolded OmpA Forms Amyloid-Like Fibrils upon Self-Association

(2015) Emily J. Danoff et al.   PLoS One

Nomenclature 2014: Amyloid fibril proteins and clinical classification of the amyloidosis

(2014) Jean D. Sipe et al.   AMYLOID-JOURNAL OF PROTEIN FOLDING DISORDERS

Biofilms formed by the archaeon Haloferax volcaniiexhibit cellular differentiation and social motility, and facilitate horizontal gene transfer

(2014) Scott Chimileski et al.   BMC BIOLOGY

Prion-like Polymerization Underlies Signal Transduction in Antiviral Immune Defense and Inflammasome Activation

(2014) Xin Cai et al.   CELL

Functional amyloid: widespread in Nature, diverse in purpose

(2014) Chi L.L. Pham et al.   Essays in Biochemistry

Fibril Formation from Pea Protein and Subsequent Gel Formation

(2014) Claire Darizu Munialo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Sequence Complexity of Amyloidogenic Regions in Intrinsically Disordered Human Proteins

(2014) Swagata Das et al.   PLoS One

Proteomic Screening for Amyloid Proteins

(2014) Anton A. Nizhnikov et al.   PLoS One

Molecular Structures of Amyloid and Prion Fibrils: Consensus versus Controversy

(2013) Robert Tycko et al.   ACCOUNTS OF CHEMICAL RESEARCH

A radish seed antifungal peptide with a high amyloid fibril-forming propensity

(2013) Megan Garvey et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Heritable Remodeling of Yeast Multicellularity by an Environmentally Responsive Prion

(2013) Daniel L. Holmes et al.   CELL

SARP: A Novel Algorithm to Assess Compositional Biases in Protein Sequences

(2013) Kirill S. Antonets et al.   Evolutionary Bioinformatics

Plant antimicrobial peptides

(2013) Robert Nawrot et al.   FOLIA MICROBIOLOGICA

Non-targeted Identification of Prions and Amyloid-forming Proteins from Yeast and Mammalian Cells

(2013) Dmitry Kryndushkin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane

(2013) S. Kikuchi et al.   SCIENCE

Critical Role of Amyloid-like Oligomers of Drosophila Orb2 in the Persistence of Memory

(2012) Amitabha Majumdar et al.   CELL

Breaking the amyloidogenicity code: Methods to predict amyloids from amino acid sequence

(2012) Abdullah B. Ahmed et al.   FEBS LETTERS

A Molecular History of the Amyloidoses

(2012) Joel N. Buxbaum et al.   JOURNAL OF MOLECULAR BIOLOGY

Self-assembly of functional, amphipathic amyloid monolayers by the fungal hydrophobin EAS

(2012) I. Macindoe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Peptide Mixtures Can Self-Assemble into Large Amyloid Fibers of Varying Size and Morphology

(2011) Devin M. Ridgley et al.   BIOMACROMOLECULES

Formation and Characterization of Amyloid-like Fibrils from Soy β-Conglycinin and Glycinin

(2010) Chuan-He Tang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

(2010) Sebastian Maurer-Stroh et al.   NATURE METHODS

The evolution of chloroplast genes and genomes in ferns

(2010) Paul G. Wolf et al.   PLANT MOLECULAR BIOLOGY

Distinct Type of Transmission Barrier Revealed by Study of Multiple Prion Determinants of Rnq1

(2010) Michele L. Kadnar et al.   PLoS Genetics

A Systematic Survey Identifies Prions and Illuminates Sequence Features of Prionogenic Proteins

(2009) Simon Alberti et al.   CELL

Short protein segments can drive a non-fibrillizing protein into the amyloid state

(2009) P. K. Teng et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Functional Amyloids As Natural Storage of Peptide Hormones in Pituitary Secretory Granules

(2009) S. K. Maji et al.   SCIENCE

The kinetics of aggregation of poly-glutamic acid based polypeptides

(2008) Martin Colaco et al.   BIOPHYSICAL CHEMISTRY

Prion Stability and Infectivity in the Environment

(2008) Richard C. Wiggins   NEUROCHEMICAL RESEARCH