Cascading influence of inorganic nitrogen sources on DOM production, composition, lability and microbial community structure in the open ocean

Differential effects of nitrate, ammonium, and urea as N sources for microbial communities in the North Pacific Ocean

(2017) I. N. Shilova et al.   LIMNOLOGY AND OCEANOGRAPHY

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Short-term variability in euphotic zone biogeochemistry and primary productivity at Station ALOHA: A case study of summer 2012

(2015) Samuel T. Wilson et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms

(2015) Marine Landa et al.   ISME Journal

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

(2015) Jessica A Bryant et al.   ISME Journal

Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-driven phytoplankton bloom

(2015) Emma K. Wear et al.   LIMNOLOGY AND OCEANOGRAPHY

Roles of diatom nutrient stress and species identity in determining the short- and long-term bioavailability of diatom exudates to bacterioplankton

(2015) Emma K. Wear et al.   MARINE CHEMISTRY

Fluorescent dissolved organic matter as a multivariate biogeochemical tracer of submarine groundwater discharge in coral reef ecosystems

(2015) Craig E. Nelson et al.   MARINE CHEMISTRY

Analysis of remineralisation, lability, temperature sensitivity and structural composition of organic matter from the upper ocean

(2015) Jørgen Bendtsen et al.   PROGRESS IN OCEANOGRAPHY

The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater

(2014) Sara Beier et al.   ENVIRONMENTAL MICROBIOLOGY

Physiology and evolution of nitrate acquisition in Prochlorococcus

(2014) Paul M Berube et al.   ISME Journal

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Microbial oceanography and the Hawaii Ocean Time-series programme

(2014) David M. Karl et al.   NATURE REVIEWS MICROBIOLOGY

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial diversity and the lability of dissolved organic carbon

(2014) C. E. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Increasing anthropogenic nitrogen in the North Pacific Ocean

(2014) I.-N. Kim et al.   SCIENCE

Closely related phytoplankton species produce similar suites of dissolved organic matter

(2014) Jamie W. Becker et al.   Frontiers in Microbiology

Physical and biological controls of nitrate concentrations in the upper subtropical North Pacific Ocean

(2013) François Ascani et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy

(2013) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

Phytoplankton species-specific release of dissolved free amino acids and their selective consumption by bacteria

(2013) Hugo Sarmento et al.   LIMNOLOGY AND OCEANOGRAPHY

The marine nitrogen cycle: recent discoveries, uncertainties and the potential relevance of climate change

(2013) M. Voss et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Functional Coding Variants in SLC6A15, a Possible Risk Gene for Major Depression

(2013) Carina Quast et al.   PLoS One

Marine bacteria exhibit a bipolar distribution

(2013) W. J. Sul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluorescence characteristics of humic-like fluorescent dissolved organic matter produced by various taxa of marine bacteria

(2012) K Shimotori et al.   AQUATIC MICROBIAL ECOLOGY

Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton

(2012) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Phytoplankton response to deep seawater nutrient addition in the North Pacific Subtropical Gyre

(2012) C Mahaffey et al.   MARINE ECOLOGY PROGRESS SERIES

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Recalcitrant Dissolved Organic Carbon Fractions

(2011) Dennis A. Hansell   Annual Review of Marine Science

Net Production and Consumption of Fluorescent Colored Dissolved Organic Matter by Natural Bacterial Assemblages Growing on Marine Phytoplankton Exudates

(2011) Cristina Romera-Castillo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Genome content of uncultivated marine Roseobacters in the surface ocean

(2011) Haiwei Luo et al.   ENVIRONMENTAL MICROBIOLOGY

DIFFERENCES IN GROWTH AND PHYSIOLOGY OF MARINE SYNECHOCOCCUS (CYANOBACTERIA) ON NITRATE VERSUS AMMONIUM ARE NOT DETERMINED SOLELY BY NITROGEN SOURCE REDOX STATE1

(2011) Jackie L. Collier et al.   JOURNAL OF PHYCOLOGY

Characterizing dissolved organic matter fluorescence with parallel factor analysis: a tutorial

(2011) Colin A. Stedmon et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter

(2011) Linda Jørgensen et al.   MARINE CHEMISTRY

Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

(2011) Dennis Hansell et al.   OCEANOGRAPHY

Release LTPs104 of the All-Species Living Tree

(2011) Raúl Munoz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

The Impact of Microbial Metabolism on Marine Dissolved Organic Matter

(2010) Elizabeth B. Kujawinski   Annual Review of Marine Science

Nitrogen Cycle of the Open Ocean: From Genes to Ecosystems

(2010) Jonathan P. Zehr et al.   Annual Review of Marine Science

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin

(2010) Craig A. Carlson et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrate supply from deep to near-surface waters of the North Pacific subtropical gyre

(2010) Kenneth S. Johnson et al.   NATURE

Phylogenetic diversity measures based on Hill numbers

(2010) A. Chao et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physical forcing of nitrogen fixation and diazotroph community structure in the North Pacific subtropical gyre

(2009) Matthew J. Church et al.   GLOBAL BIOGEOCHEMICAL CYCLES

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

(2009) Patrick D. Schloss   PLoS One

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes

(2009) A. C. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal dynamics of dissolved combined neutral sugars and the quality of dissolved organic matter in the Northwestern Sargasso Sea

(2008) Stuart J. Goldberg et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Phylogenetic diversity of cyanobacterialnarBgenes from various marine habitats

(2008) Ryan W. Paerl et al.   ENVIRONMENTAL MICROBIOLOGY

Production of bio-refractory fluorescent dissolved organic matter in the ocean interior

(2008) Youhei Yamashita et al.   Nature Geoscience

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

(2008) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY