Differential effects of nitrate, ammonium, and urea as N sources for microbial communities in the North Pacific Ocean

Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific

(2016) Alyse A Larkin et al.   ISME Journal

Temporal variability of nitrogen fixation and particulate nitrogen export at Station ALOHA

(2016) Daniela Böttjer et al.   LIMNOLOGY AND OCEANOGRAPHY

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

(2016) Gregory K. Farrant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal assemblages and short-lived blooms in coastal north-west Atlantic Ocean bacterioplankton

(2015) Heba El-Swais et al.   ENVIRONMENTAL MICROBIOLOGY

High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures

(2015) Oscar A Sosa et al.   ISME Journal

Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron

(2015) Jill A Sohm et al.   ISME Journal

Deconstructing the Polymerase Chain Reaction: Understanding and Correcting Bias Associated with Primer Degeneracies and Primer-Template Mismatches

(2015) Stefan J. Green et al.   PLoS One

The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater

(2014) Sara Beier et al.   ENVIRONMENTAL MICROBIOLOGY

Physiology and evolution of nitrate acquisition in Prochlorococcus

(2014) Paul M Berube et al.   ISME Journal

A modified method for on-line determination of trace ammonium in seawater with a long-path liquid waveguide capillary cell and spectrophotometric detection

(2014) Yong Zhu et al.   MARINE CHEMISTRY

Increasing anthropogenic nitrogen in the North Pacific Ocean

(2014) I.-N. Kim et al.   SCIENCE

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Closely related phytoplankton species produce similar suites of dissolved organic matter

(2014) Jamie W. Becker et al.   Frontiers in Microbiology

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Iron, phosphorus, and nitrogen supply ratios define the biogeography of nitrogen fixation

(2013) Ben A. Ward et al.   LIMNOLOGY AND OCEANOGRAPHY

Sources and distributions of Mn, Fe, Co, Ni, Cu, Zn, and Cd relative to macronutrients along the central California coast during the spring and summer upwelling season

(2013) Dondra V. Biller et al.   MARINE CHEMISTRY

Processes and patterns of oceanic nutrient limitation

(2013) C. M. Moore et al.   Nature Geoscience

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The central California Current transition zone: A broad region exhibiting evidence for iron limitation

(2013) Dondra V. Biller et al.   PROGRESS IN OCEANOGRAPHY

High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ system for simplified amplicon library preparation

(2013) P. V. Moonsamy et al.   TISSUE ANTIGENS

In situinteractions between photosynthetic picoeukaryotes and bacterioplankton in the Atlantic Ocean: evidence for mixotrophy

(2013) Manuela Hartmann et al.   Environmental Microbiology Reports

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Enhanced upper ocean stratification with climate change in the CMIP3 models

(2012) Antonietta Capotondi et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment

(2011) Yanmei Shi et al.   ENVIRONMENTAL MICROBIOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability

(2011) Anne W Thompson et al.   ISME Journal

Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean

(2011) Pia H Moisander et al.   ISME Journal

DIFFERENCES IN GROWTH AND PHYSIOLOGY OF MARINE SYNECHOCOCCUS (CYANOBACTERIA) ON NITRATE VERSUS AMMONIUM ARE NOT DETERMINED SOLELY BY NITROGEN SOURCE REDOX STATE1

(2011) Jackie L. Collier et al.   JOURNAL OF PHYCOLOGY

Assimilation of upwelled nitrate by small eukaryotes in the Sargasso Sea

(2011) Sarah E. Fawcett et al.   Nature Geoscience

Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer

(2011) E. Ortega-Retuerta et al.   POLAR BIOLOGY

Nitrogen Cycle of the Open Ocean: From Genes to Ecosystems

(2010) Jonathan P. Zehr et al.   Annual Review of Marine Science

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Inorganic and organic nitrogen uptake by phytoplankton and heterotrophic bacteria in the stratified Mid-Atlantic Bight

(2010) Paul B. Bradley et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Measuring primary production rates in the ocean: Enigmatic results between incubation and non-incubation methods at Station ALOHA

(2010) P. D. Quay et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

(2010) Yanmei Shi et al.   ISME Journal

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

(2010) Scott M Gifford et al.   ISME Journal

Relative influence of nitrogen and phosphorous availability on phytoplankton physiology and productivity in the oligotrophic sub-tropical North Atlantic Ocean

(2010) C. Mark Moore et al.   LIMNOLOGY AND OCEANOGRAPHY

Nitrogen and phosphorus co-limitation of bacterial productivity and growth in the oligotrophic subtropical North Atlantic

(2010) M. M. Mills et al.   LIMNOLOGY AND OCEANOGRAPHY

Nutrient limitation of picophytoplankton photosynthesis and growth in the tropical North Atlantic

(2010) Margaret Davey et al.   LIMNOLOGY AND OCEANOGRAPHY

Some thoughts on the concept of colimitation: Three definitions and the importance of bioavailability

(2010) Mak A. Saito et al.   LIMNOLOGY AND OCEANOGRAPHY

The Mixed Lineage Nature of Nitrogen Transport and Assimilation in Marine Eukaryotic Phytoplankton: A Case Study of Micromonas

(2010) Sarah M. McDonald et al.   MOLECULAR BIOLOGY AND EVOLUTION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Role of urea in microbial metabolism in aquatic systems: a biochemical and molecular review

(2009) CM Solomon et al.   AQUATIC MICROBIAL ECOLOGY

Diversity of urea-degrading microorganisms in open-ocean and estuarine planktonic communities

(2009) Jackie L. Collier et al.   ENVIRONMENTAL MICROBIOLOGY

UREASE GENE SEQUENCES FROM ALGAE AND HETEROTROPHIC BACTERIA IN AXENIC AND NONAXENIC PHYTOPLANKTON CULTURES

(2009) Kristopher M. Baker et al.   JOURNAL OF PHYCOLOGY

Ecological Genomics of Marine Picocyanobacteria

(2009) D. J. Scanlan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes

(2009) A. C. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon

(2008) Pia H Moisander et al.   ISME Journal

Urea distribution and uptake in the Atlantic Ocean between 50°N and 50°S

(2008) SC Painter et al.   MARINE ECOLOGY PROGRESS SERIES

Interpretation of fast repetition rate (FRR) fluorescence: signatures of phytoplankton community structure versus physiological state

(2008) DJ Suggett et al.   MARINE ECOLOGY PROGRESS SERIES

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impacts of Atmospheric Anthropogenic Nitrogen on the Open Ocean

(2008) R. A. Duce et al.   SCIENCE