The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater

Changes in bacterial diversity in response to dissolved organic matter supply in a continuous culture experiment

(2013) M Landa et al.   AQUATIC MICROBIAL ECOLOGY

Functional and compositional succession of bacterioplankton in response to a gradient in bioavailable dissolved organic carbon

(2013) Julie Dinasquet et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study

(2013) M. Landa et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton species-specific release of dissolved free amino acids and their selective consumption by bacteria

(2013) Hugo Sarmento et al.   LIMNOLOGY AND OCEANOGRAPHY

Structuring of bacterioplankton communities by specific dissolved organic carbon compounds

(2012) Laura Gómez-Consarnau et al.   ENVIRONMENTAL MICROBIOLOGY

Use of phytoplankton-derived dissolved organic carbon by different types of bacterioplankton

(2012) Hugo Sarmento et al.   ENVIRONMENTAL MICROBIOLOGY

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

Multiple B-vitamin depletion in large areas of the coastal ocean

(2012) S. A. Sanudo-Wilhelmy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Vitamin B1 and B12 Uptake and Cycling by Plankton Communities in Coastal Ecosystems

(2012) Florian Koch et al.   Frontiers in Microbiology

Omics for understanding microbial functional dynamics

(2011) Janet K. Jansson et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community transcription patterns during a marine phytoplankton bloom

(2011) Johanna M. Rinta-Kanto et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment

(2011) Yanmei Shi et al.   ENVIRONMENTAL MICROBIOLOGY

Relationship between induced phytoplankton blooms and the structure and dynamics of the free-living heterotrophic bacterial community

(2011) I Lekunberri et al.   MARINE ECOLOGY PROGRESS SERIES

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

SeqTrim: a high-throughput pipeline for preprocessing any type of sequence reads

(2010) Juan Falgueras et al.   BMC BIOINFORMATICS

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

(2010) Frank J Stewart et al.   ISME Journal

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

(2010) Scott M Gifford et al.   ISME Journal

Unlocking Short Read Sequencing for Metagenomics

(2010) Sébastien Rodrigue et al.   PLoS One

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11

(2008) H. James Tripp et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial carbon processing by generalist species in the coastal ocean

(2008) Xiaozhen Mou et al.   NATURE