Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq

Ncl Synchronously Regulates Na+, K+, and Cl − in Soybean and Greatly Increases the Grain Yield in Saline Field Conditions

(2016) Tuyen Duc Do et al.   Scientific Reports

Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean

(2016) Gunvant Patil et al.   Scientific Reports

Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq

(2016) Wei Chen et al.   Frontiers in Plant Science

Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.)

(2016) Yi Zhou et al.   PLoS One

Expression partitioning of homeologs and tandem duplications contribute to salt tolerance in wheat (Triticum aestivum L.)

(2016) Yumei Zhang et al.   Scientific Reports

RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

(2015) Longxing Hu et al.   BMC GENOMICS

Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress

(2015) Huizi DuanMu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

ThERF1regulates its target genesviabinding to a novelcis-acting element in response to salt stress

(2015) Liuqiang Wang et al.   Journal of Integrative Plant Biology

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Genetic characterization of group A acetylsaponin-deficient mutants from wild soybean (Glycine sojaSieb. and Zucc.)

(2015) Panneerselvam Krishnamurthy et al.   PLANT BREEDING

A novel Cys2/His2 zinc finger protein gene from sweetpotato, IbZFP1, is involved in salt and drought tolerance in transgenic Arabidopsis

(2015) Feibing Wang et al.   PLANTA

Ethylene responsive factors in the orchestration of stress responses in monocotyledonous plants

(2015) Sanjukta Dey et al.   Frontiers in Plant Science

Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

(2014) Vikas Belamkar et al.   BMC GENOMICS

Shoot chloride exclusion and salt tolerance in grapevine is associated with differential ion transporter expression in roots

(2014) Sam W Henderson et al.   BMC PLANT BIOLOGY

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

(2014) Ying-hui Li et al.   NATURE BIOTECHNOLOGY

Salinity tolerance in soybean is modulated by natural variation inGmSALT3

(2014) Rongxia Guan et al.   PLANT JOURNAL

Transcriptome Analysis of Shade-Induced Inhibition on Leaf Size in Relay Intercropped Soybean

(2014) Wanzhuo Gong et al.   PLoS One

Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing

(2014) Xinpeng Qi et al.   Nature Communications

Comparative Transcriptome Analysis of Leaves and Roots in Response to Sudden Increase in Salinity inBrassica napusby RNA-seq

(2014) Hui-Yee Yong et al.   Biomed Research International

Wheat and barley dehydrins under cold, drought, and salinity – what can LEA-II proteins tell us about plant stress response?

(2014) Klára Kosová et al.   Frontiers in Plant Science

Genetic mapping of quantitative trait loci conditioning salt tolerance in wild soybean (Glycine soja) PI 483463

(2013) Bo-Keun Ha et al.   EUPHYTICA

Early Transcriptomic Adaptation to Na2CO3Stress Altered the Expression of a Quarter of the Total Genes in the Maize Genome and Exhibited Shared and Distinctive Profiles with NaCl and High pH Stresses

(2013) Li-Min Zhang et al.   Journal of Integrative Plant Biology

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis ETHYLENE RESPONSE FACTOR1 Regulates Abiotic Stress-Responsive Gene Expression by Binding to Different cis-Acting Elements in Response to Different Stress Signals

(2013) M.-C. Cheng et al.   PLANT PHYSIOLOGY

NFYA1 Is Involved in Regulation of Postgermination Growth Arrest Under Salt Stress in Arabidopsis

(2013) Yan-Jie Li et al.   PLoS One

Association mapping combined with linkage analysis for aluminum tolerance among soybean cultivars released in Yellow and Changjiang River Valleys in China

(2013) Paul C. Korir et al.   THEORETICAL AND APPLIED GENETICS

Late Embryogenesis Abundant (LEA) proteins in legumes

(2013) Marina Battaglia et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Genetic studies on saline and sodic tolerances in soybean

(2012) Donghe Xu et al.   BREEDING SCIENCE

Development of a chromosome segment substitution line population with wild soybean (Glycine soja Sieb. et Zucc.) as donor parent

(2012) Wubin Wang et al.   EUPHYTICA

Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing

(2012) Xiu-Duo Fan et al.   GENE

Physiological and Molecular Features ofPuccinellia tenuifloraTolerating Salt and Alkaline-Salt Stress

(2012) Xia Zhang et al.   Journal of Integrative Plant Biology

Validation and high-resolution mapping of a major quantitative trait locus for alkaline salt tolerance in soybean using residual heterozygous line

(2012) D. D. Tuyen et al.   MOLECULAR BREEDING

Identification of Candidate Genes Underlying an Iron Efficiency Quantitative Trait Locus in Soybean

(2012) G. A. Peiffer et al.   PLANT PHYSIOLOGY

Arabidopsis NRT1.5 Is Another Essential Component in the Regulation of Nitrate Reallocation and Stress Tolerance

(2012) C.-Z. Chen et al.   PLANT PHYSIOLOGY

Transcript Profile of the Response of Two Soybean Genotypes to Potassium Deficiency

(2012) Cheng Wang et al.   PLoS One

Anion Channels/Transporters in Plants: From Molecular Bases to Regulatory Networks

(2011) Hélène Barbier-Brygoo et al.   Annual Review of Plant Biology

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification and validation of a major QTL for salt tolerance in soybean

(2011) A. Hamwieh et al.   EUPHYTICA

Transcriptome analysis reveals salt-stress-regulated biological processes and key pathways in roots of cotton (Gossypium hirsutum L.)

(2011) Dongxia Yao et al.   GENOMICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Involvement of plant C2H2-type zinc finger transcription factors in stress responses

(2011) Agnieszka Kiełbowicz-Matuk   PLANT SCIENCE

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment

(2010) Ying Ge et al.   BMC PLANT BIOLOGY

Alkaline-stress response in Glycine soja leaf identifies specific transcription factors and ABA-mediated signaling factors

(2010) Ying Ge et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Comparative transcriptome analysis of contrasting foxtail millet cultivars in response to short-term salinity stress

(2010) Swati Puranik et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Nitrate Transporter NRT1.8 Functions in Nitrate Removal from the Xylem Sap and Mediates Cadmium Tolerance

(2010) J.-Y. Li et al.   PLANT CELL

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

(2010) M. Y. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a major QTL allele from wild soybean (Glycine soja Sieb. & Zucc.) for increasing alkaline salt tolerance in soybean

(2010) D. D. Tuyen et al.   THEORETICAL AND APPLIED GENETICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR

(2009) Ruibo Hu et al.   BMC MOLECULAR BIOLOGY

Comparative effects of salt and alkali stresses on organic acid accumulation and ionic balance of seabuckthorn (Hippophae rhamnoides L.)

(2009) Wanchao Chen et al.   INDUSTRIAL CROPS AND PRODUCTS

Comparative effects of salt-stress and alkali-stress on the growth, photosynthesis, solute accumulation, and ion balance of barley plants

(2009) C.-W. Yang et al.   PHOTOSYNTHETICA

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Identification of quantitative trait loci associated with salt tolerance during seedling growth in soybean (Glycine maxL.)

(2008) Huatao Chen et al.  

Conserved salt tolerance quantitative trait locus (QTL) in wild and cultivated soybeans

(2008) Aladdin Hamwieh et al.   BREEDING SCIENCE

CO2 regulator SLAC1 and its homologues are essential for anion homeostasis in plant cells

(2008) Juntaro Negi et al.   NATURE

Reactive oxygen signaling and abiotic stress

(2008) Gad Miller et al.   PHYSIOLOGIA PLANTARUM