Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress

MYB transcription factors, active players in abiotic stress signaling

(2015) Chaonan Li et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Moderate drought causes dramatic floral transcriptomic reprogramming to ensure successful reproductive development in Arabidopsis

(2014) Xuan Ma et al.   BMC PLANT BIOLOGY

Differential Transcriptomic Analysis by RNA-Seq of GSNO-Responsive Genes Between Arabidopsis Roots and Leaves

(2014) Juan C. Begara-Morales et al.   PLANT AND CELL PHYSIOLOGY

Identification of differentially expressed genes potentially involved in the tolerance of Lotus tenuis to long-term alkaline stress

(2014) Rosalía Cristina Paz et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Correction: Transcriptomic Analysis of Petunia hybrida in Response to Salt Stress Using High Throughput RNA Sequencing

(2014)   PLoS One

Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid

(2013) Yan Wang et al.   BMC GENOMICS

Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

(2013) Zhen-hua Dang et al.   BMC GENOMICS

Expression of wild soybean WRKY20 in Arabidopsis enhances drought tolerance and regulates ABA signalling

(2013) Xiao Luo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analysis of the Alfalfa Root Transcriptome in Response to Salinity Stress

(2013) Olga A. Postnikova et al.   PLANT AND CELL PHYSIOLOGY

Over-expression of a novel JAZ family gene from Glycine soja, increases salt and alkali stress tolerance

(2012) Dan Zhu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing

(2012) Xiu-Duo Fan et al.   GENE

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing

(2012) T. Kyndt et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cooperation of three WRKY-domain transcription factors WRKY18, WRKY40, and WRKY60 in repressing two ABA-responsive genes ABI4 and ABI5 in Arabidopsis

(2012) Zhi-Qiang Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A wheat R2R3-MYB gene, TaMYB30-B, improves drought stress tolerance in transgenic Arabidopsis

(2012) Lichao Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative Transcriptomic Analysis of Salt Adaptation in Roots of Contrasting Medicago truncatula Genotypes

(2012) Ons Zahaf et al.   Molecular Plant

UV-A Light Induces Anthocyanin Biosynthesis in a Manner Distinct from Synergistic Blue + UV-B Light and UV-A/Blue Light Responses in Different Parts of the Hypocotyls in Turnip Seedlings

(2012) Yu Wang et al.   PLANT AND CELL PHYSIOLOGY

Identification of wild soybean (Glycine soja) TIFY family genes and their expression profiling analysis under bicarbonate stress

(2012) Dan Zhu et al.   PLANT CELL REPORTS

The role of WRKY transcription factors in plant abiotic stresses

(2011) Ligang Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

NAC transcription factors in plant abiotic stress responses

(2011) Kazuo Nakashima et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RNA-Seq analysis in MeV

(2011) E. A. Howe et al.   BIOINFORMATICS

Heterologous Expression of the Chrysanthemum R2R3-MYB Transcription Factor CmMYB2 Enhances Drought and Salinity Tolerance, Increases Hypersensitivity to ABA and Delays Flowering in Arabidopsis thaliana

(2011) Hong Shan et al.   MOLECULAR BIOTECHNOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

GsTIFY10, a novel positive regulator of plant tolerance to bicarbonate stress and a repressor of jasmonate signaling

(2011) Dan Zhu et al.   PLANT MOLECULAR BIOLOGY

GsZFP1, a new Cys2/His2-type zinc-finger protein, is a positive regulator of plant tolerance to cold and drought stress

(2011) Xiao Luo et al.   PLANTA

A single-repeat R3-MYB transcription factor MYBC1 negatively regulates freezing tolerance in Arabidopsis

(2010) Hong Zhai et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Transcription factors in plants and ABA dependent and independent abiotic stress signalling

(2010) P. K. Agarwal et al.   BIOLOGIA PLANTARUM

Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment

(2010) Ying Ge et al.   BMC PLANT BIOLOGY

The effect of next-generation sequencing technology on complex trait research

(2010) Aaron G. Day-Williams et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

Alkaline-stress response in Glycine soja leaf identifies specific transcription factors and ABA-mediated signaling factors

(2010) Ying Ge et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Research on plant abiotic stress responses in the post-genome era: past, present and future

(2010) Takashi Hirayama et al.   PLANT JOURNAL

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Improving salinity tolerance of plants through conventional breeding and genetic engineering: An analytical comparison

(2009) Muhammad Ashraf et al.   BIOTECHNOLOGY ADVANCES

Comparative Profiles of Gene Expression in Leaves and Roots of Maize Seedlings under Conditions of Salt Stress and the Removal of Salt Stress

(2009) Dong-Jin Qing et al.   PLANT AND CELL PHYSIOLOGY

Effects of exogenous GABA on gene expression ofCaragana intermediaroots under NaCl stress: regulatory roles for H2O2and ethylene production

(2009) SHENG-QING SHI et al.   PLANT CELL AND ENVIRONMENT

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Standardization of real-time PCR gene expression data from independent biological replicates

(2008) Erik Willems et al.   ANALYTICAL BIOCHEMISTRY

Bicarbonate transport in cell physiology and disease

(2008) Emmanuelle Cordat et al.   BIOCHEMICAL JOURNAL

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Reactive oxygen signaling and abiotic stress

(2008) Gad Miller et al.   PHYSIOLOGIA PLANTARUM

Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants

(2008) Qi-Yun Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE