Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.)

Transcriptome analysis of nitrogen-starvation-responsive genes in rice

(2015) Wenzhu Yang et al.   BMC PLANT BIOLOGY

OsbZIP23 and OsbZIP45, members of the rice basic leucine zipper transcription factor family, are involved in drought tolerance

(2015) Su-Hyun Park et al.   Plant Biotechnology Reports

GmWRKY27 interacts with GmMYB174 to reduce expression ofGmNAC29for stress tolerance in soybean plants

(2015) Fang Wang et al.   PLANT JOURNAL

The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice

(2015) Ning Zhu et al.   PLANT SCIENCE

Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat

(2015) Donghai Mao et al.   THEORETICAL AND APPLIED GENETICS

ABA Inducible Rice Protein Phosphatase 2C Confers ABA Insensitivity and Abiotic Stress Tolerance in Arabidopsis

(2015) Amarjeet Singh et al.   PLoS One

Development and identification of a introgression line with strong drought resistance at seedling stage derived from Oryza sativa L. mating with Oryza rufipogon Griff

(2014) Fantao Zhang et al.   EUPHYTICA

Identification of QTLs associated with salt or alkaline tolerance at the seedling stage in rice under salt or alkaline stress

(2014) Jing-long Liang et al.   EUPHYTICA

OsWRKY42 Represses OsMT1d and Induces Reactive Oxygen Species and Leaf Senescence in Rice

(2014) Muho Han et al.   MOLECULES AND CELLS

Overexpression of the rice basic leucine zipper transcription factor OsbZIP12 confers drought tolerance to rice and makes seedlings hypersensitive to ABA

(2014) Joungsu Joo et al.   Plant Biotechnology Reports

Inhibition of theArabidopsisSalt Overly Sensitive Pathway by 14-3-3 Proteins

(2014) Huapeng Zhou et al.   PLANT CELL

A glutathione responsive rice glyoxalase II, OsGLYII-2, functions in salinity adaptation by maintaining better photosynthesis efficiency and anti-oxidant pool

(2014) Ajit Ghosh et al.   PLANT JOURNAL

Transcription factor WRKY46 regulates osmotic stress responses and stomatal movement independently in Arabidopsis

(2014) Zhong Jie Ding et al.   PLANT JOURNAL

A STRESS-RESPONSIVE NAC1-Regulated Protein Phosphatase Gene Rice Protein Phosphatase18 Modulates Drought and Oxidative Stress Tolerance through Abscisic Acid-Independent Reactive Oxygen Species Scavenging in Rice

(2014) J. You et al.   PLANT PHYSIOLOGY

Maintenance of Chloroplast Structure and Function by Overexpression of the Rice MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE Gene Leads to Enhanced Salt Tolerance in Tobacco

(2014) S. Wang et al.   PLANT PHYSIOLOGY

JcLEA, a Novel LEA-Like Protein from Jatropha curcas, Confers a High Level of Tolerance to Dehydration and Salinity in Arabidopsis thaliana

(2014) Jing Liang et al.   PLoS One

Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings

(2014) Ning Xiao et al.   THEORETICAL AND APPLIED GENETICS

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

An Arabidopsis R2R3-MYB transcription factor, AtMYB20, negatively regulates type 2C serine/threonine protein phosphatases to enhance salt tolerance

(2013) Mei Hua Cui et al.   FEBS LETTERS

Transcriptome profile reveals heat response mechanism at molecular and metabolic levels in rice flag leaf

(2013) Xianwen Zhang et al.   GENE

Expression analysis of rice VQ genes in response to biotic and abiotic stresses

(2013) D.Y. Kim et al.   GENE

Molecular evolution of plant P5CS gene involved in proline biosynthesis

(2013) Archana N. Rai et al.   MOLECULAR BIOLOGY REPORTS

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

(2013) Peter A C 't Hoen et al.   NATURE BIOTECHNOLOGY

bHLH122is important for drought and osmotic stress resistance inArabidopsisand in the repression of ABA catabolism

(2013) Wenwen Liu et al.   NEW PHYTOLOGIST

SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice

(2013) R. Schmidt et al.   PLANT CELL

OsACA6, a P-type IIB Ca2+ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes

(2013) Kazi M. K. Huda et al.   PLANT JOURNAL

Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquum

(2013) Ting Zhang et al.   PLANT MOLECULAR BIOLOGY

OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice

(2013) Citao Liu et al.   PLANT MOLECULAR BIOLOGY

OsTZF1, a CCCH-Tandem Zinc Finger Protein, Confers Delayed Senescence and Stress Tolerance in Rice by Regulating Stress-Related Genes

(2013) A. Jan et al.   PLANT PHYSIOLOGY

The Arabidopsis ETHYLENE RESPONSE FACTOR1 Regulates Abiotic Stress-Responsive Gene Expression by Binding to Different cis-Acting Elements in Response to Different Stress Signals

(2013) M.-C. Cheng et al.   PLANT PHYSIOLOGY

Rice WRKY13 Regulates Cross Talk between Abiotic and Biotic Stress Signaling Pathways by Selective Binding to Different cis-Elements

(2013) J. Xiao et al.   PLANT PHYSIOLOGY

An S-Domain Receptor-Like Kinase, OsSIK2, Confers Abiotic Stress Tolerance and Delays Dark-Induced Leaf Senescence in Rice

(2013) L.-J. Chen et al.   PLANT PHYSIOLOGY

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

(2013) D. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice

(2012) An Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Ion Exchangers NHX1 and NHX2 Mediate Active Potassium Uptake into Vacuoles to Regulate Cell Turgor and Stomatal Function in Arabidopsis

(2012) V. Barragan et al.   PLANT CELL

Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots inOryza sativa

(2012) LU WANG et al.   PLANT CELL AND ENVIRONMENT

A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.)

(2012) Ji Huang et al.   PLANT MOLECULAR BIOLOGY

Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq

(2012) A. Kakumanu et al.   PLANT PHYSIOLOGY

Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice

(2012) Hao Chen et al.   PLANT SCIENCE

OsLEA3-2, an Abiotic Stress Induced Gene of Rice Plays a Key Role in Salt and Drought Tolerance

(2012) Jianli Duan et al.   PLoS One

Pleiotropism of the Photoperiod-Insensitive Allele of Hd1 on Heading Date, Plant Height and Yield Traits in Rice

(2012) Zhen-Hua Zhang et al.   PLoS One

Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)

(2011) Garladinne Mallikarjuna et al.   BIOTECHNOLOGY LETTERS

Expression of a rice DREB1 gene, OsDREB1D, enhances cold and high-salt tolerance in transgenic Arabidopsis

(2011) Yang Zhang et al.   BMB Reports

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice

(2011) Zeng Tao et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA methylation changes detected by methylation-sensitive amplified polymorphism in two contrasting rice genotypes under salt stress

(2011) Wensheng Wang et al.   Journal of Genetics and Genomics

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

Identification and characterization of annexin gene family in rice

(2011) Sravan Kumar Jami et al.   PLANT CELL REPORTS

bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice

(2011) Citao Liu et al.   PLANTA

Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress

(2011) Shi-Yong Song et al.   PLANTA

Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice

(2011) Hao-Wen Li et al.   PLANTA

mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress

(2011) Youko Oono et al.   Rice

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.)

(2010) Hiroshi Mizuno et al.   BMC GENOMICS

Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development

(2010) Amarjeet Singh et al.   BMC GENOMICS

Quantitative trait loci for seed dormancy in rice

(2010) Wei Li et al.   EUPHYTICA

The Arabidopsis AP2/ERF transcription factor RAP2.6 participates in ABA, salt and osmotic stress responses

(2010) Qiang Zhu et al.   GENE

Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice

(2010) S.-J. Sun et al.   JOURNAL OF EXPERIMENTAL BOTANY

The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice

(2010) Hironori Takasaki et al.   MOLECULAR GENETICS AND GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Overexpression of a homopeptide repeat-containing bHLH protein gene (OrbHLH001) from Dongxiang Wild Rice confers freezing and salt tolerance in transgenic Arabidopsis

(2010) Fei Li et al.   PLANT CELL REPORTS

Overexpression of a NAC transcription factor enhances rice drought and salt tolerance

(2009) Xingnan Zheng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

(2009) Joshua S Bloom et al.   BMC GENOMICS

The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networks involved in abiotic stress resistance

(2009) Oksoon Yang et al.   GENE

Genetic diversity associated with conservation of endangered Dongxiang wild rice (Oryza rufipogon)

(2009) J. Xie et al.   GENETIC RESOURCES AND CROP EVOLUTION

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis

(2009) Jing Zhou et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice

(2008) Dong Wang et al.   BMC GENOMICS

Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines

(2008) Xiaomeng Ge et al.   BMC PLANT BIOLOGY

Collection and Comparative Analysis of 1888 Full-length cDNAs from Wild Rice Oryza rufipogon Griff. W1943

(2008) T. Lu et al.   DNA RESEARCH

Overexpression of a TFIIIA-type zinc finger protein geneZFP252enhances drought and salt tolerance in rice (Oryza sativaL.)

(2008) Dong-Qing Xu et al.   FEBS LETTERS

The Receptor-Like Cytoplasmic Kinase (OsRLCK) Gene Family in Rice: Organization, Phylogenetic Relationship, and Expression during Development and Stress

(2008) Shubha Vij et al.   Molecular Plant

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses

(2008) Yuanqing Jiang et al.   PLANT MOLECULAR BIOLOGY

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

(2008) Honghong Hu et al.   PLANT MOLECULAR BIOLOGY

Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice

(2008) Y. Xiang et al.   PLANT PHYSIOLOGY

Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes

(2008) Liang-Fa Ge et al.   PLANTA