RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress

Transcriptome analysis of rice root heterosis by RNA-Seq

(2013) Rongrong Zhai et al.   BMC GENOMICS

Transcriptome characterization and sequencing-based identification of drought-responsive genes in potato

(2013) Ning Zhang et al.   MOLECULAR BIOLOGY REPORTS

Analysis of the Alfalfa Root Transcriptome in Response to Salinity Stress

(2013) Olga A. Postnikova et al.   PLANT AND CELL PHYSIOLOGY

Comparative Transcriptomic Analysis of Salt Adaptation in Roots of Contrasting Medicago truncatula Genotypes

(2012) Ons Zahaf et al.   Molecular Plant

Spatiotemporal Regulation of Lateral Root Organogenesis inArabidopsisby Cytokinin

(2012) Agnieszka Bielach et al.   PLANT CELL

Cell Expansion-Mediated Organ Growth Is Affected by Mutations in Three EXIGUA Genes

(2012) Silvia Rubio-Díaz et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Transcription factors expressed in soybean roots under drought stress

(2011) S.S. Pereira et al.   GENETICS AND MOLECULAR RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root

(2010) Hironaka Tsukagoshi et al.   CELL

Root-Specific Transcript Profiling of Contrasting Rice Genotypes in Response to Salinity Stress

(2010) Olivier Cotsaftis et al.   Molecular Plant

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Salt stress differentially affects growth-mediating β-expansins in resistant and sensitive maize (Zea mays L.)

(2010) Christoph-Martin Geilfus et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A new role for plant R2R3-MYB transcription factors in cell cycle regulation

(2009) Eleonora Cominelli et al.   CELL RESEARCH

Mild salinity stimulates a stress-induced morphogenic response in Arabidopsis thaliana roots

(2009) G. Zolla et al.   JOURNAL OF EXPERIMENTAL BOTANY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE