Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes

miR408 overexpression causes increased drought tolerance in chickpea

(2015) Mortaza Hajyzadeh et al.   GENE

MicroRNAs in Control of Plant Development

(2015) Chao Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Role of microRNAs in plant drought tolerance

(2015) Jannatul Ferdous et al.   PLANT BIOTECHNOLOGY JOURNAL

Small RNA and degradome sequencing reveals important microRNA function inAstragalus chrysochlorusresponse to selenium stimuli

(2015) Ozgur Cakir et al.   PLANT BIOTECHNOLOGY JOURNAL

UDP-Glucosyltransferase71C5, a Major Glucosyltransferase, Mediates Abscisic Acid Homeostasis in Arabidopsis

(2015) Zhen Liu et al.   PLANT PHYSIOLOGY

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

(2015) Xue Cao et al.   BMC GENOMICS

Role of MicroRNAs in Biotic and Abiotic Stress Responses in Crop Plants

(2014) Rajesh Kumar   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

A comprehensive microRNA expression profile of the backfat tissue from castrated and intact full-sib pair male pigs

(2014) Ying Bai et al.   BMC GENOMICS

General mechanisms of drought response and their application in drought resistance improvement in plants

(2014) Yujie Fang et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genome-wide analysis of Water-stress-responsive microRNA expression profile in tobacco roots

(2014) Fuqiang Yin et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

MicroRNA-Based Biotechnology for Plant Improvement

(2014) Baohong Zhang et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton

(2014) Fuliang Xie et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microarray analysis of differentially expressed mRNAs and miRNAs in young leaves of sorghum under dry-down conditions

(2014) Luca Pasini et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification and functional analysis of novel and conserved microRNAs in tomato

(2014) Yushi Luan et al.   MOLECULAR BIOLOGY REPORTS

GenBank

(2014) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Differential expression of microRNAs and other small RNAs in barley between water and drought conditions

(2014) Michael Hackenberg et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing

(2014) Junli Feng et al.   PLANTA

Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion

(2014) Flávia Thiebaut et al.   PLoS One

Identification of Novel and Conserved MicroRNAs Related to Drought Stress in Potato by Deep Sequencing

(2014) Ning Zhang et al.   PLoS One

Tolerance to drought and salt stress in plants: Unraveling the signaling networks

(2014) Dortje Golldack et al.   Frontiers in Plant Science

Epigenetic marks in an adaptive water stress-responsive gene in tomato roots under normal and drought conditions

(2013) Rodrigo M González et al.   Epigenetics

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization and expression profiling of selected microRNAs in tomato (Solanum lycopersicon) ‘Jiangshu14’

(2013) Nicholas Kibet Korir et al.   MOLECULAR BIOLOGY REPORTS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

(2013) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Open or Close the Gate – Stomata Action Under the Control of Phytohormones in Drought Stress Conditions

(2013) Agata Daszkowska-Golec et al.   Frontiers in Plant Science

Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress

(2012) Yuanyuan Ren et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide analysis of SAUR gene family in Solanaceae species

(2012) Jian Wu et al.   GENE

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

Engineering drought tolerant tomato plants over-expressing BcZAT12 gene encoding a C2H2 zinc finger transcription factor

(2012) Avinash Chandra Rai et al.   PHYTOCHEMISTRY

Drought stress adaptation: metabolic adjustment and regulation of gene expression

(2012) Sujata Bhargava et al.   PLANT BREEDING

The SAUR19 subfamily of SMALL AUXIN UP RNA genes promote cell expansion

(2012) Angela K. Spartz et al.   PLANT JOURNAL

OsTIR1 and OsAFB2 Downregulation via OsmiR393 Overexpression Leads to More Tillers, Early Flowering and Less Tolerance to Salt and Drought in Rice

(2012) Kuaifei Xia et al.   PLoS One

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

(2012) Vahap Eldem et al.   PLoS One

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

(2011) Tianzuo Wang et al.   BMC GENOMICS

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

Abscisic Acid: Emergence of a Core Signaling Network

(2010) Sean R. Cutler et al.   Annual Review of Plant Biology

Over-expression of microRNA169 confers enhanced drought tolerance to tomato

(2010) Xiaohui Zhang et al.   BIOTECHNOLOGY LETTERS

miR398 regulation in rice of the responses to abiotic and biotic stresses depends onCSD1andCSD2expression

(2010) Yuzhu Lu et al.   FUNCTIONAL PLANT BIOLOGY

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-Glucosyltransferase UGT74E2 Modulates Arabidopsis Architecture and Water Stress Tolerance

(2010) V. B. Tognetti et al.   PLANT CELL

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

Protein Phosphatases 2C Regulate the Activation of the Snf1-Related Kinase OST1 by Abscisic Acid in Arabidopsis

(2009) F. Vlad et al.   PLANT CELL

SAUR39, a Small Auxin-Up RNA Gene, Acts as a Negative Regulator of Auxin Synthesis and Transport in Rice

(2009) S. Kant et al.   PLANT PHYSIOLOGY

miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula

(2009) Inês Trindade et al.   PLANTA

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Over-expression of OsDREB genes lead to enhanced drought tolerance in rice

(2008) Jian-Qiang Chen et al.   BIOTECHNOLOGY LETTERS

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

MicroRNA-mediated Systemic Down-regulation of Copper Protein Expression in Response to Low Copper Availability inArabidopsis

(2008) Salah E. Abdel-Ghany et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors

(2008) Daiqing Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Isolation and functional characterization of HvDREB1—a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare

(2008) Zhao-Shi Xu et al.   JOURNAL OF PLANT RESEARCH

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

MicroRNA166 controls root and nodule development in Medicago truncatula

(2008) Adnane Boualem et al.   PLANT JOURNAL

Jasmonate Signaling: Toward an Integrated View

(2008) K. Kazan et al.   PLANT PHYSIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA