High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production

(2012) Chunxiang Fu et al.   PLANT BIOTECHNOLOGY JOURNAL

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs

(2012) Fuliang Xie et al.   PLANT MOLECULAR BIOLOGY

MicroRNA Expression Analysis in the Cellulosic Biofuel Crop Switchgrass (Panicum virgatum) under Abiotic Stress

(2012) Guiling Sun et al.   PLoS One

Effects of Aluminum Oxide Nanoparticles on the Growth, Development, and microRNA Expression of Tobacco (Nicotiana tabacum)

(2012) Caitlin E. Burklew et al.   PLoS One

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

(2011) Yi Zheng et al.   BMC BIOINFORMATICS

In Vivo Identification of Tumor- Suppressive PTEN ceRNAs in an Oncogenic BRAF-Induced Mouse Model of Melanoma

(2011) Florian A. Karreth et al.   CELL

Salt and Drought Stresses Induce the Aberrant Expression of microRNA Genes in Tobacco

(2011) Taylor P. Frazier et al.   MOLECULAR BIOTECHNOLOGY

Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes

(2011) Jia-Xing Yue et al.   NEW PHYTOLOGIST

Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks

(2011) Hui Shen et al.   NEW PHYTOLOGIST

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

The Phaseolus vulgaris miR159a precursor encodes a second differentially expressed microRNA

(2011) Cecilia Contreras-Cubas et al.   PLANT MOLECULAR BIOLOGY

The heterologous expression in Arabidopsis of a chrysanthemum Cys2/His2 zinc finger protein gene confers salinity and drought tolerance

(2011) Haishun Gao et al.   PLANTA

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass

(2011) G. S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

(2011) Li Wei et al.   GENOME BIOLOGY

Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

Identification of microRNAs and their targets in switchgrass, a model biofuel plant species

(2010) Jessica Matts et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

Rfam: Wikipedia, clans and the "decimal" release

(2010) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

The MicroRNA159-Regulated GAMYB-like Genes Inhibit Growth and Promote Programmed Cell Death in Arabidopsis

(2010) M. M. Alonso-Peral et al.   PLANT PHYSIOLOGY

Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum)

(2010) Fuliang Xie et al.   PLANTA

miR-29 and miR-30 regulate B-Myb expression during cellular senescence

(2010) I. Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

MicroRazerS: rapid alignment of small RNA reads

(2009) A.-K. Emde et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Expression of MicroRNAs in Cotton

(2009) Baohong Zhang et al.   MOLECULAR BIOTECHNOLOGY

Sorting Out Small RNAs

(2008) V. Narry Kim   CELL