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Title
The target spectrum of SdsR small RNA inSalmonella
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages gkw632
Publisher
Oxford University Press (OUP)
Online
2016-07-13
DOI
10.1093/nar/gkw632
References
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Note: Only part of the references are listed.- Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo
- (2016) Erik Holmqvist et al. EMBO JOURNAL
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- (2016) Ashley Parker et al. JOURNAL OF BACTERIOLOGY
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- (2016) Yanjie Chao et al. MOLECULAR CELL
- Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens
- (2016) Kathrin S. Fröhlich et al. MOLECULAR MICROBIOLOGY
- Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
- (2016) Alexander J. Westermann et al. NATURE
- Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent tosdiA
- (2016) Yue Hao et al. NUCLEIC ACIDS RESEARCH
- Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies
- (2015) Lars Barquist et al. Annual Review of Genetics
- A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing Dynamics
- (2015) Lihui Feng et al. CELL
- Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
- (2015) M. Miyakoshi et al. EMBO JOURNAL
- Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics
- (2015) T. Kim et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress
- (2015) Maksym Bobrovskyy et al. MOLECULAR MICROBIOLOGY
- Identification of bacterial sRNA regulatory targets using ribosome profiling
- (2015) Jing Wang et al. NUCLEIC ACIDS RESEARCH
- Differential RNA-seq ofVibrio choleraeidentifies the VqmR small RNA as a regulator of biofilm formation
- (2015) Kai Papenfort et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer inSalmonella
- (2015) Kai Papenfort et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An assessment of bacterial small RNA target prediction programs
- (2015) Adrien Pain et al. RNA Biology
- Characterization of the Escherichia coli σS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis
- (2015) Clelia Peano et al. Scientific Reports
- RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
- (2015) Shabarinath Srikumar et al. PLoS Pathogens
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- (2015) Gracjana Klein et al. Biomed Research International
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- (2015) Alessandro G. Franchini et al. PLoS One
- MicL, a new E-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
- (2014) M. S. Guo et al. GENES & DEVELOPMENT
- Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli
- (2014) Jai J. Tree et al. MOLECULAR CELL
- Structure of the AcrAB–TolC multidrug efflux pump
- (2014) Dijun Du et al. NATURE
- TargetRNA2: identifying targets of small regulatory RNAs in bacteria
- (2014) Mary Beth Kery et al. NUCLEIC ACIDS RESEARCH
- Expanding the RpoS/σS-Network by RNA Sequencing and Identification of σS-Controlled Small RNAs in Salmonella
- (2014) Corinne Lévi-Meyrueis et al. PLoS One
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- (2014) Ivana Bilusic et al. RNA Biology
- Evolutionary patterns of Escherichia coli small RNAs and their regulatory interactions
- (2014) A. Peer et al. RNA
- Planting the seed: target recognition of short guide RNAs
- (2014) Tim Künne et al. TRENDS IN MICROBIOLOGY
- Regulatory RNAs and target mRNA decay in prokaryotes
- (2013) David Lalaouna et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Small RNA-Mediated Activation of Sugar Phosphatase mRNA Regulates Glucose Homeostasis
- (2013) Kai Papenfort et al. CELL
- A small RNA activates CFA synthase by isoform-specific mRNA stabilization
- (2013) Kathrin Sophie Fröhlich et al. EMBO JOURNAL
- Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices
- (2013) Nicholas De Lay et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Comparative genomics boosts target prediction for bacterial small RNAs
- (2013) P. R. Wright et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding
- (2013) I. J. Silva et al. RNA
- β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity
- (2013) A. Gutierrez et al. Nature Communications
- Post-Transcriptional Control of the Escherichia coli PhoQ-PhoP Two-Component System by Multiple sRNAs Involves a Novel Pairing Region of GcvB
- (2013) Audrey Coornaert et al. PLoS Genetics
- The bacterial protein Hfq: much more than a mere RNA-binding factor
- (2012) Patricio Sobrero et al. CRITICAL REVIEWS IN MICROBIOLOGY
- Multiple factors dictate target selection by Hfq-binding small RNAs
- (2012) Chase L Beisel et al. EMBO JOURNAL
- An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
- (2012) Yanjie Chao et al. EMBO JOURNAL
- Noncanonical repression of translation initiation through small RNA recruitment of the RNA chaperone Hfq
- (2012) G. Desnoyers et al. GENES & DEVELOPMENT
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- (2012) Katarzyna J. Bandyra et al. MOLECULAR CELL
- Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA
- (2012) Colin P. Corcoran et al. MOLECULAR MICROBIOLOGY
- RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
- (2012) Heladia Salgado et al. NUCLEIC ACIDS RESEARCH
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- (2012) Ingrid M. Keseler et al. NUCLEIC ACIDS RESEARCH
- The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
- (2012) K. Papenfort et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2012) C. Kroger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hfq and Hfq-dependent small RNAs are major contributors to multicellular development inSalmonella entericaserovar Typhimurium
- (2012) Claudia Monteiro et al. RNA Biology
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- (2011) Martina Doetsch et al. FEBS Journal
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- Regulation by Small RNAs in Bacteria: Expanding Frontiers
- (2011) Gisela Storz et al. MOLECULAR CELL
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- (2011) Florian Eggenhofer et al. NUCLEIC ACIDS RESEARCH
- Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
- (2011) E. B. Gogol et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discriminating tastes
- (2011) Chase L. Beisel et al. RNA Biology
- Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis
- (2011) Hubert Salvail et al. Wiley Interdisciplinary Reviews-RNA
- The role of Hfq in bacterial pathogens
- (2010) Yanjie Chao et al. CURRENT OPINION IN MICROBIOLOGY
- Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
- (2010) Erik Holmqvist et al. EMBO JOURNAL
- Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity
- (2010) Ramakanth Madhugiri et al. MOLECULAR GENETICS AND GENOMICS
- Reprogramming of anaerobic metabolism by the FnrS small RNA
- (2010) Sylvain Durand et al. MOLECULAR MICROBIOLOGY
- Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA
- (2010) K. Papenfort et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulatory RNAs in Bacteria
- (2009) Lauren S. Waters et al. CELL
- Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target
- (2009) N. Figueroa-Bossi et al. GENES & DEVELOPMENT
- The H-NS-like protein StpA represses the RpoS (Ï38) regulon during exponential growth ofSalmonellaTyphimurium
- (2009) Sacha Lucchini et al. MOLECULAR MICROBIOLOGY
- Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
- (2009) Kai Papenfort et al. MOLECULAR MICROBIOLOGY
- Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
- (2009) Verena Pfeiffer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Global Systems-Level Analysis of Hfq and SmpB Deletion Mutants in Salmonella: Implications for Virulence and Global Protein Translation
- (2009) Charles Ansong et al. PLoS One
- Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level
- (2009) Kai Papenfort et al. RESEARCH IN MICROBIOLOGY
- IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
- (2008) Anke Busch et al. BIOINFORMATICS
- The Crp-Activated Small Noncoding Regulatory RNA CyaR (RyeE) Links Nutritional Status to Group Behavior
- (2008) N. De Lay et al. JOURNAL OF BACTERIOLOGY
- Down-regulation of Outer Membrane Proteins by Noncoding RNAs: Unraveling the cAMP–CRP- and σE-Dependent CyaR–ompX Regulatory Case
- (2008) Jesper Johansen et al. JOURNAL OF MOLECULAR BIOLOGY
- Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis
- (2008) Kai Papenfort et al. MOLECULAR MICROBIOLOGY
- Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
- (2008) Boris Görke et al. NATURE REVIEWS MICROBIOLOGY
- The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator
- (2008) Maude Guillier et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq
- (2008) Alexandra Sittka et al. PLoS Genetics
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