EcoCyc: fusing model organism databases with systems biology

Construction and completion of flux balance models from pathway databases

(2012) Mario Latendresse et al.   BIOINFORMATICS

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

(2012) P. S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

(2012) Sung Yoon et al.   GENOME BIOLOGY

The evolution of metabolic networks of E. coli

(2011) David J Baumler et al.   BMC Systems Biology

Theoretical and empirical quality assessment of transcription factor-binding motifs

(2011) Alejandra Medina-Rivera et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA

(2011) J. J. Lemke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FITBAR: a web tool for the robust prediction of prokaryotic regulons

(2010) Jacques Oberto   BMC BIOINFORMATICS

Genome Scale Reconstruction of a Salmonella Metabolic Model

(2009) Manal AbuOun et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor σEinEscherichia coliby both direct and indirect mechanisms

(2009) Alessandra Costanzo et al.   MOLECULAR MICROBIOLOGY

Control of bacterial transcription, translation and replication by (p)ppGpp

(2008) Anjana Srivatsan et al.   CURRENT OPINION IN MICROBIOLOGY

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes

(2008) A. Grote et al.   NUCLEIC ACIDS RESEARCH