RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

Network Integration of Parallel Metabolic and Transcriptional Data Reveals Metabolic Modules that Regulate Macrophage Polarization

(2015) Abhishek K. Jha et al.   IMMUNITY

H-NS Silencing of the Salmonella Pathogenicity Island 6-Encoded Type VI Secretion System Limits Salmonella enterica Serovar Typhimurium Interbacterial Killing

(2015) Yannick R. Brunet et al.   INFECTION AND IMMUNITY

Host Delivery of Favorite Meals for Intracellular Pathogens

(2015) Yousef Abu Kwaik et al.   PLoS Pathogens

Salmonella vaccines: lessons from the mouse model or bad teaching?

(2014) Richard A Strugnell et al.   CURRENT OPINION IN MICROBIOLOGY

MicL, a new  E-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein

(2014) M. S. Guo et al.   GENES & DEVELOPMENT

Salmonella methylglyoxal detoxification by STM3117-encoded lactoylglutathione lyase affects virulence in coordination with Salmonella pathogenicity island 2 and phagosomal acidification

(2014) Sangeeta Chakraborty et al.   MICROBIOLOGY-SGM

Bacterial itaconate degradation promotes pathogenicity

(2014) Jahminy Sasikaran et al.   Nature Chemical Biology

Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing

(2014) T. Conway et al.   mBio

Small RNA functions in carbon metabolism and virulence of enteric pathogens

(2014) Kai Papenfort et al.   Frontiers in Cellular and Infection Microbiology

Iron at the interface of immunity and infection

(2014) Manfred Nairz et al.   Frontiers in Pharmacology

Salmonella–Host Interactions – Modulation of the Host Innate Immune System

(2014) Daniel Hurley et al.   Frontiers in Immunology

A Bacterial Virulence Protein Promotes Pathogenicity by Inhibiting the Bacterium’s Own F1Fo ATP Synthase

(2013) Eun-Jin Lee et al.   CELL

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

TheSalmonella entericagiant adhesin SiiE binds to polarized epithelial cells in a lectin-like manner

(2013) Carolin Wagner et al.   CELLULAR MICROBIOLOGY

Salmonella enterica Serovar Typhimurium Skills To Succeed in the Host: Virulence and Regulation

(2013) A. Fabrega et al.   CLINICAL MICROBIOLOGY REVIEWS

The FUN of identifying gene function in bacterial pathogens; insights from Salmonella functional genomics

(2013) Disa L Hammarlöf et al.   CURRENT OPINION IN MICROBIOLOGY

Heterogeneity of intracellular replication of bacterial pathogens

(2013) Sophie Helaine et al.   CURRENT OPINION IN MICROBIOLOGY

Live-attenuated bacteria as a cancer vaccine vector

(2013) Bertrand Toussaint et al.   Expert Review of Vaccines

Identification of HilD-Regulated Genes in Salmonella enterica Serovar Typhimurium

(2013) B. L. Petrone et al.   JOURNAL OF BACTERIOLOGY

Role of the Salmonella enterica serovar Typhi Fur regulator and small RNAs RfrA and RfrB in iron homeostasis and interaction with host cells

(2013) J.-M. Leclerc et al.   MICROBIOLOGY-SGM

The Type VI Secretion System Encoded in SPI-6 Plays a Role in Gastrointestinal Colonization and Systemic Spread of Salmonella enterica serovar Typhimurium in the Chicken

(2013) David Pezoa et al.   PLoS One

Diverse Secreted Effectors Are Required for Salmonella Persistence in a Mouse Infection Model

(2013) Afshan S. Kidwai et al.   PLoS One

Role of Salmonella Typhimurium small RNAs RyhB-1 and RyhB-2 in the oxidative stress response

(2013) Iván L. Calderón et al.   RESEARCH IN MICROBIOLOGY

A model based criterion for gene expression calls using RNA-seq data

(2013) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

RNA-Mediated Regulation in Pathogenic Bacteria

(2013) I. Caldelari et al.   Cold Spring Harbor Perspectives in Medicine

Parallel Exploitation of Diverse Host Nutrients Enhances Salmonella Virulence

(2013) Benjamin Steeb et al.   PLoS Pathogens

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

(2012) Brian J Haas et al.   BMC GENOMICS

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Type VI Secretion System-Associated Gene Clusters Contribute to Pathogenesis of Salmonella enterica Serovar Typhimurium

(2012) David T. Mulder et al.   INFECTION AND IMMUNITY

Functions of the Salmonella pathogenicity island 2 (SPI-2) type III secretion system effectors

(2012) R. Figueira et al.   MICROBIOLOGY-SGM

Control of a Salmonella virulence locus by an ATP-sensing leader messenger RNA

(2012) Eun-Jin Lee et al.   NATURE

Selection of Salmonella enterica Serovar Typhi Genes Involved during Interaction with Human Macrophages by Screening of a Transposon Mutant Library

(2012) Sébastien C. Sabbagh et al.   PLoS One

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics ofSalmonellasmall RNA expression in non-growing bacteria located inside eukaryotic cells

(2012) Álvaro D. Ortega et al.   RNA Biology

sRNAs and the virulence ofSalmonella entericaserovar Typhimurium

(2012) Magali Hébrard et al.   RNA Biology

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Acidic pH induced STM1485 gene is essential for intracellular replication of Salmonella

(2012) Uday Sankar Allam et al.   Virulence

The challenge of relating gene expression to the virulence of Salmonella enterica serovar Typhimurium

(2011) Magali Hébrard et al.   CURRENT OPINION IN BIOTECHNOLOGY

Integrated stress responses in Salmonella

(2011) Shu Shen et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Genome Sequences of Salmonella enterica Serovar Typhimurium, Choleraesuis, Dublin, and Gallinarum Strains of Well- Defined Virulence in Food-Producing Animals

(2011) E. J. Richardson et al.   JOURNAL OF BACTERIOLOGY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Transcriptional Priming of Salmonella Pathogenicity Island-2 Precedes Cellular Invasion

(2011) Suzanne E. Osborne et al.   PLoS One

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

The Global Burden of NontyphoidalSalmonellaGastroenteritis

(2010) Shannon E. Majowicz et al.   CLINICAL INFECTIOUS DISEASES

Efficacy of Intracellular Activated Promoters for Generation of Salmonella-Based Vaccines

(2010) X. Xu et al.   INFECTION AND IMMUNITY

Role of Cross Talk in Regulating the Dynamic Expression of the Flagellar Salmonella Pathogenicity Island 1 and Type 1 Fimbrial Genes

(2010) S. Saini et al.   JOURNAL OF BACTERIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Dissemination of invasiveSalmonellavia bacterial-induced extrusion of mucosal epithelia

(2010) Leigh A. Knodler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System

(2010) Ana M. Tomljenovic-Berube et al.   PLoS Genetics

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes

(2009) Carlos J Blondel et al.   BMC GENOMICS

Global Trends in Typhoid and Paratyphoid Fever

(2009) John A. Crump et al.   CLINICAL INFECTIOUS DISEASES

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Cooperation ofSalmonellapathogenicity islands 1 and 4 is required to breach epithelial barriers

(2008) Roman G. Gerlach et al.   CELLULAR MICROBIOLOGY

During infection of epithelial cells Salmonella enterica serovar Typhimurium undergoes a time-dependent transcriptional adaptation that results in simultaneous expression of three type 3 secretion systems

(2008) I. Hautefort et al.   CELLULAR MICROBIOLOGY

FliZ Is a Posttranslational Activator of FlhD4C2-Dependent Flagellar Gene Expression

(2008) S. Saini et al.   JOURNAL OF BACTERIOLOGY

A rough guide to the non-coding RNA world ofSalmonella

(2008) Jörg Vogel   MOLECULAR MICROBIOLOGY

A dynamic view of the spread and intracellular distribution of Salmonella enterica

(2008) Pietro Mastroeni et al.   NATURE REVIEWS MICROBIOLOGY

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

(2008) Gilly Padalon-Brauch et al.   NUCLEIC ACIDS RESEARCH

HilD-mediated transcriptional cross-talk between SPI-1 and SPI-2

(2008) V. H. Bustamante et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salmonellae interplay with host cells

(2007) Andrea Haraga et al.   NATURE REVIEWS MICROBIOLOGY