Revisiting the coding potential of theE. coligenome through Hfq co-immunoprecipitation

Widespread suppression of intragenic transcription initiation by H-NS

(2014) S. S. Singh et al.   GENES & DEVELOPMENT

The double-stranded transcriptome of Escherichia coli

(2014) M. Lybecker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intracellular ribonucleases involved in transcript processing and decay: Precision tools for RNA

(2013) Cecília Maria Arraiano et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulatory RNAs and target mRNA decay in prokaryotes

(2013) David Lalaouna et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

Cycling of RNAs on Hfq

(2013) E. Gerhart H. Wagner   RNA Biology

Hfq restructures RNA-IN and RNA-OUT and facilitates antisense pairing in the Tn10/IS10 system

(2013) J. A. Ross et al.   RNA

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY†

(2012) Nilshad N. Salim et al.   NUCLEIC ACIDS RESEARCH

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

Genome-wide detection of novel regulatory RNAs in E. coli

(2011) R. Raghavan et al.   GENOME RESEARCH

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

BigWig and BigBed: enabling browsing of large distributed datasets

(2010) W. J. Kent et al.   BIOINFORMATICS

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq

(2010) Joseph A. Ross et al.   MOLECULAR MICROBIOLOGY

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli

(2010) Yoshiki Ikeda et al.   MOLECULAR MICROBIOLOGY

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

(2010) C. Lorenz et al.   NUCLEIC ACIDS RESEARCH

An Upstream Hfq Binding Site in the fhlA mRNA Leader Region Facilitates the OxyS-fhlA Interaction

(2010) Nilshad N. Salim et al.   PLoS One

Positive regulation by small RNAs and the role of Hfq

(2010) T. Soper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Antisense Transcription in Escherichia coli

(2010) J. E. Dornenburg et al.   mBio

Next generation software for functional trend analysis

(2009) G. F. Berriz et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes

(2009) Edmund Loh et al.   CELL

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

(2009) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level

(2009) Kai Papenfort et al.   RESEARCH IN MICROBIOLOGY

The RNA binding protein Hfq interacts specifically with tRNAs

(2008) T. Lee et al.   RNA

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

(2008) T. J. Soper et al.   RNA

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics