Effect of Global Regulators RpoS and Cyclic-AMP/CRP on the Catabolome and Transcriptome of Escherichia coli K12 during Carbon- and Energy-Limited Growth

Environmental Dependence of Stationary-Phase Metabolism in Bacillus subtilis and Escherichia coli

(2014) V. Chubukov et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

(2014) Stefan Klumpp et al.   CURRENT OPINION IN BIOTECHNOLOGY

A design-constraint trade-off underpins the diversity in ecologically important traits in species Escherichia coli

(2013) Katherine Phan et al.   ISME Journal

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

(2013) S. Berthoumieux et al.   Molecular Systems Biology

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

Competition of Escherichia coli O157 with a drinking water bacterial community at low nutrient concentrations

(2012) Marius Vital et al.   WATER RESEARCH

Acetate scavenging activity in Escherichia coli: interplay of acetyl–CoA synthetase and the PEP–glyoxylate cycle in chemostat cultures

(2011) Sergio Renilla et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli

(2011) Thomas Ferenci et al.   BMC MICROBIOLOGY

In vitro transcription profiling of the σ S subunit of bacterial RNA polymerase: re-definition of the σ S regulon and identification of σ S -specific promoter sequence elements

(2011) Anna Maciąg et al.   NUCLEIC ACIDS RESEARCH

Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase

(2010) Kaspar Valgepea et al.   BMC Systems Biology

Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the ‘feast to famine’ gradient in Escherichia coli

(2010) Matthew F. Traxler et al.   MOLECULAR MICROBIOLOGY

Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli

(2010) Tao Dong et al.   MOLECULAR MICROBIOLOGY

How to live at very low substrate concentration

(2010) Thomas Egli   WATER RESEARCH

Specific growth rate dependent transcriptome profiling of Escherichia coli K12 MG1655 in accelerostat cultures

(2009) Ranno Nahku et al.   JOURNAL OF BIOTECHNOLOGY

Interplay of cellular cAMP levels,  S activity and oxidative stress resistance in Escherichia coli

(2009) E. Barth et al.   MICROBIOLOGY-SGM

Transcriptional effects of CRP* expression in Escherichia coli

(2009) Reza Khankal et al.   Journal of Biological Engineering

Interplay between Cyclic AMP-Cyclic AMP Receptor Protein and Cyclic di-GMP Signaling in Vibrio cholerae Biofilm Formation

(2008) J. C. N. Fong et al.   JOURNAL OF BACTERIOLOGY

Cyclic AMP-Dependent Catabolite Repression Is the Dominant Control Mechanism of Metabolic Fluxes under Glucose Limitation in Escherichia coli

(2008) A. Nanchen et al.   JOURNAL OF BACTERIOLOGY

Functional organisation of Escherichia coli transcriptional regulatory network

(2008) Agustino Martínez-Antonio et al.   JOURNAL OF MOLECULAR BIOLOGY

Control of RpoS in global gene expression of Escherichia coli in minimal media

(2008) Tao Dong et al.   MOLECULAR GENETICS AND GENOMICS