Differential RNA-seq ofVibrio choleraeidentifies the VqmR small RNA as a regulator of biofilm formation

Differential RNA-seq: the approach behind and the biological insight gained

(2014) Cynthia M Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

MicL, a new  E-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein

(2014) M. S. Guo et al.   GENES & DEVELOPMENT

Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli

(2014) Maureen K. Thomason et al.   JOURNAL OF BACTERIOLOGY

Quorum regulatory small RNAs repress type VI secretion inVibrio cholerae

(2014) Yi Shao et al.   MOLECULAR MICROBIOLOGY

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection

(2014) Ansel Hsiao et al.   NATURE

Small RNAs in the control of RpoS, CsgD, and biofilm architecture ofEscherichia coli

(2014) Franziska Mika et al.   RNA Biology

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Small RNA-Mediated Activation of Sugar Phosphatase mRNA Regulates Glucose Homeostasis

(2013) Kai Papenfort et al.   CELL

Bacterial Quorum Sensing: Its Role in Virulence and Possibilities for Its Control

(2013) S. T. Rutherford et al.   Cold Spring Harbor Perspectives in Medicine

High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates

(2013) Gaurav Dugar et al.   PLoS Genetics

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

Individual and Combined Roles of the Master Regulators AphA and LuxR in Control of the Vibrio harveyi Quorum-Sensing Regulon

(2012) J. C. van Kessel et al.   JOURNAL OF BACTERIOLOGY

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA

(2012) Colin P. Corcoran et al.   MOLECULAR MICROBIOLOGY

Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets

(2012) Yi Shao et al.   MOLECULAR MICROBIOLOGY

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

(2012) Nina Sesto et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52

(2012) Tao G. Dong et al.   NUCLEIC ACIDS RESEARCH

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual-function RNA regulators in bacteria

(2011) Carin K. Vanderpool et al.   BIOCHIMIE

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

AphA and LuxR/HapR reciprocally control quorum sensing in vibrios

(2011) S. T. Rutherford et al.   GENES & DEVELOPMENT

Integration of Cyclic di-GMP and Quorum Sensing in the Control of vpsT and aphA in Vibrio cholerae

(2011) Disha Srivastava et al.   JOURNAL OF BACTERIOLOGY

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide

(2011) Nour Sayed et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action

(2011) Hironori Otaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms

(2011) C. D. Nadell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rocks and shallows of deep RNA sequencing: Examples in the Vibrio cholerae RNome

(2011) C. A. Raabe et al.   RNA

A Genome-Wide Approach to Discovery of Small RNAs Involved in Regulation of Virulence in Vibrio cholerae

(2011) Evan S. Bradley et al.   PLoS Pathogens

Regulating iron storage and metabolism with RNA: an overview of posttranscriptional controls of intracellular iron homeostasis

(2011) Hubert Salvail et al.   Wiley Interdisciplinary Reviews-RNA

Translation initiation: variations in the mechanism can be anticipated

(2010) Naglis Malys et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Vibrio cholerae VpsT Regulates Matrix Production and Motility by Directly Sensing Cyclic di-GMP

(2010) P. V. Krasteva et al.   SCIENCE

Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations

(2010) S. Gottesman et al.   Cold Spring Harbor Perspectives in Biology

Molecular Diversification in the Quorum-Sensing System of Vibrio cholerae: Role of Natural Selection in the Emergence of Pandemic Strains

(2009) N. M. Talyzina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

(2009) Rotem Sorek et al.   NATURE REVIEWS GENETICS

Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence

(2009) Richard S. P. Horler et al.   NUCLEIC ACIDS RESEARCH

Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing

(2009) Jane M. Liu et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Quantifying the Integration of Quorum-Sensing Signals with Single-Cell Resolution

(2009) Tao Long et al.   PLOS BIOLOGY

Quorum Sensing Controls Biofilm Formation in Vibrio cholerae through Modulation of Cyclic Di-GMP Levels and Repression of vpsT

(2008) C. M. Waters et al.   JOURNAL OF BACTERIOLOGY

Distinct Sensory Pathways in Vibrio cholerae El Tor and Classical Biotypes Modulate Cyclic Dimeric GMP Levels To Control Biofilm Formation

(2008) B. K. Hammer et al.   JOURNAL OF BACTERIOLOGY

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

(2008) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles

(2008) Tianyan Song et al.   MOLECULAR MICROBIOLOGY

A quantitative comparison of sRNA-based and protein-based gene regulation

(2008) Pankaj Mehta et al.   Molecular Systems Biology