Centuries of genome instability and evolution in soft-shell clam, Mya arenaria, bivalve transmissible neoplasia
Published 2023 View Full Article
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Title
Centuries of genome instability and evolution in soft-shell clam, Mya arenaria, bivalve transmissible neoplasia
Authors
Keywords
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Journal
Nature Cancer
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-10-03
DOI
10.1038/s43018-023-00643-7
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Related references
Note: Only part of the references are listed.- Epigenetic and genetic population structure is coupled in a marine invertebrate
- (2023) Katherine Silliman et al. Genome Biology and Evolution
- The evolution of two transmissible cancers in Tasmanian devils
- (2023) Maximilian R. Stammnitz et al. SCIENCE
- Mitochondrial genome sequencing of marine leukaemias reveals cancer contagion between clam species in the Seas of Southern Europe
- (2022) Daniel Garcia-Souto et al. eLife
- Horizontal transmission of disseminated neoplasia in the widespread clam Macoma balthica from the Southern Baltic Sea
- (2022) Alicja Michnowska et al. MOLECULAR ECOLOGY
- Somatic mutation rates scale with lifespan across mammals
- (2022) Alex Cagan et al. NATURE
- Pan-Cancer Analyses Identify the CTC1-STN1-TEN1 Complex as a Protective Factor and Predictive Biomarker for Immune Checkpoint Blockade in Cancer
- (2022) Lishuai Wang et al. Frontiers in Genetics
- Survival and Detection of Bivalve Transmissible Neoplasia from the Soft-Shell Clam Mya arenaria (MarBTN) in Seawater
- (2022) Rachael M. Giersch et al. Pathogens
- Population genetics of clonally transmissible cancers
- (2022) Máire Ní Leathlobhair et al. Nature Ecology & Evolution
- Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C
- (2021) Zev N. Kronenberg et al. Nature Communications
- Increased somatic mutation burdens in normal human cells due to defective DNA polymerases
- (2021) Philip S. Robinson et al. NATURE GENETICS
- Traits of a mussel transmissible cancer are reminiscent of a parasitic life style
- (2021) E. A. V. Burioli et al. Scientific Reports
- The repertoire of mutational signatures in human cancer
- (2020) Ludmil B. Alexandrov et al. NATURE
- Comprehensive molecular characterization of mitochondrial genomes in human cancers
- (2020) Yuan Yuan et al. NATURE GENETICS
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The genome of the softshell clam Mya arenaria and the evolution of apoptosis
- (2020) David Plachetzki et al. Genome Biology and Evolution
- Recurrent horizontal transfer identifies mitochondrial positive selection in a transmissible cancer
- (2020) Andrea Strakova et al. Nature Communications
- Evolution and lineage dynamics of a transmissible cancer in Tasmanian devils
- (2020) Young Mi Kwon et al. PLOS BIOLOGY
- Somatic evolution and global expansion of an ancient transmissible cancer lineage
- (2019) Adrian Baez-Ortega et al. SCIENCE
- A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe
- (2019) Marisa A Yonemitsu et al. eLife
- The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils
- (2018) Maximilian R. Stammnitz et al. CANCER CELL
- The Tandem Duplicator Phenotype Is a Prevalent Genome-Wide Cancer Configuration Driven by Distinct Gene Mutations
- (2018) Francesca Menghi et al. CANCER CELL
- Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
- (2018) Michael J. Roach et al. BMC BIOINFORMATICS
- Helmsman: fast and efficient mutation signature analysis for massive sequencing datasets
- (2018) Jedidiah Carlson et al. BMC GENOMICS
- Bayesian inference of negative and positive selection in human cancers
- (2017) Donate Weghorn et al. NATURE GENETICS
- Widespread transmission of independent cancer lineages within multiple bivalve species
- (2016) Michael J. Metzger et al. NATURE
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Rapid evolutionary response to a transmissible cancer in Tasmanian devils
- (2016) Brendan Epstein et al. Nature Communications
- Restricting retrotransposons: a review
- (2016) John L. Goodier Mobile DNA
- REPdenovo: Inferring De Novo Repeat Motifs from Short Sequence Reads
- (2016) Chong Chu et al. PLoS One
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Horizontal Transmission of Clonal Cancer Cells Causes Leukemia in Soft-Shell Clams
- (2015) Michael J. Metzger et al. CELL
- Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor
- (2015) Brennan Decker et al. GENOME RESEARCH
- Neoplastic diseases of marine bivalves
- (2015) María J. Carballal et al. JOURNAL OF INVERTEBRATE PATHOLOGY
- Clock-like mutational processes in human somatic cells
- (2015) Ludmil B Alexandrov et al. NATURE GENETICS
- How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis
- (2015) Young-Sam Lee et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A second transmissible cancer in Tasmanian devils
- (2015) Ruth J. Pye et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- How a homolog of high-fidelity replicases conducts mutagenic DNA synthesis
- (2015) Young-Sam Lee et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A context dependent role for DNA methylation in bivalves
- (2014) M. R. Gavery et al. Briefings in Functional Genomics
- Estimating telomere length from whole genome sequence data
- (2014) Zhihao Ding et al. NUCLEIC ACIDS RESEARCH
- Activation of transcription and retrotransposition of a novel retroelement,Steamer, in neoplastic hemocytes of the molluskMya arenaria
- (2014) Gloria Arriagada et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transmissible Dog Cancer Genome Reveals the Origin and History of an Ancient Cell Lineage
- (2014) E. P. Murchison et al. SCIENCE
- Signatures of mutational processes in human cancer
- (2013) Ludmil B. Alexandrov et al. NATURE
- Deciphering Signatures of Mutational Processes Operative in Human Cancer
- (2013) Ludmil B. Alexandrov et al. Cell Reports
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer
- (2012) Elizabeth P. Murchison et al. CELL
- Mutational Processes Molding the Genomes of 21 Breast Cancers
- (2012) Serena Nik-Zainal et al. CELL
- cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
- (2012) Günter Klambauer et al. NUCLEIC ACIDS RESEARCH
- Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
- (2012) Adam C. English et al. PLoS One
- Haemocytic leukemia in Prince Edward Island (PEI) soft shell clam (Mya arenaria): Spatial distribution in agriculturally impacted estuaries
- (2012) Annette Muttray et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Mitochondrial Capture by a Transmissible Cancer
- (2011) C. A. Rebbeck et al. SCIENCE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- ORIGINS AND EVOLUTION OF A TRANSMISSIBLE CANCER
- (2009) Clare A. Rebbeck et al. EVOLUTION
- DNA Polymerase POLN Participates in Cross-Link Repair and Homologous Recombination
- (2009) G.-L. Moldovan et al. MOLECULAR AND CELLULAR BIOLOGY
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Tandem duplication/triplication correlated with poly-cytosine stretch variation in human mitochondrial DNA D-loop region
- (2008) W.-Y. Hung et al. MUTAGENESIS
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