Somatic evolution and global expansion of an ancient transmissible cancer lineage

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(2019) Johannes Rainer et al.   BIOINFORMATICS

Molecular Signatures of Regression of the Canine Transmissible Venereal Tumor

(2018) Dan Frampton et al.   CANCER CELL

The evolutionary history of dogs in the Americas

(2018) Máire Ní Leathlobhair et al.   SCIENCE

Stan: A Probabilistic Programming Language

(2017) Bob Carpenter et al.   Journal of Statistical Software

Bayesian inference of negative and positive selection in human cancers

(2017) Donate Weghorn et al.   NATURE GENETICS

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Short inverted repeats contribute to localized mutability in human somatic cells

(2017) Xueqing Zou et al.   NUCLEIC ACIDS RESEARCH

Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis

(2017) Eric Letouzé et al.   Nature Communications

Ancient European dog genomes reveal continuity since the Early Neolithic

(2017) Laura R. Botigué et al.   Nature Communications

Rapid evolution of the human mutation spectrum

(2017) Kelley Harris et al.   eLife

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

(2016) Nicholas J. Haradhvala et al.   CELL

A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative Phosphorylation

(2016) Jason D. Arroyo et al.   Cell Metabolism

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

(2016) Serena Nik-Zainal et al.   NATURE

The topography of mutational processes in breast cancer genomes

(2016) Sandro Morganella et al.   Nature Communications

Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution

(2016) Jimmy Van den Eynden et al.   PLoS Genetics

A Sixth Modality of Infectious Disease: Contagious Cancer from Devils to Clams and Beyond

(2016) Michael J. Metzger et al.   PLoS Pathogens

Mitochondrial genetic diversity, selection and recombination in a canine transmissible cancer

(2016) Andrea Strakova et al.   eLife

Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds

(2015) Pontus Skoglund et al.   CURRENT BIOLOGY

The cancer which survived: insights from the genome of an 11000 year-old cancer

(2015) Andrea Strakova et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor

(2015) Brennan Decker et al.   GENOME RESEARCH

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Timing, rates and spectra of human germline mutation

(2015) Raheleh Rahbari et al.   NATURE GENETICS

Gene essentiality and synthetic lethality in haploid human cells

(2015) V. A. Blomen et al.   SCIENCE

Identification and characterization of essential genes in the human genome

(2015) T. Wang et al.   SCIENCE

Transcription-Associated Mutagenesis

(2014) Sue Jinks-Robertson et al.   Annual Review of Genetics

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The changing global distribution and prevalence of canine transmissible venereal tumour

(2014) Andrea Strakova et al.   BMC Veterinary Research

Immunology of naturally transmissible tumours

(2014) Hannah V. Siddle et al.   IMMUNOLOGY

Measuring error rates in genomic perturbation screens: gold standards for human functional genomics

(2014) T. Hart et al.   Molecular Systems Biology

Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications

(2014) Andy Rimmer et al.   NATURE GENETICS

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

(2014) Marc P. Hoeppner et al.   PLoS One

Transmissible Dog Cancer Genome Reveals the Origin and History of an Ancient Cell Lineage

(2014) E. P. Murchison et al.   SCIENCE

Signatures of mutational processes in human cancer

(2013) Ludmil B. Alexandrov et al.   NATURE

Deciphering Signatures of Mutational Processes Operative in Human Cancer

(2013) Ludmil B. Alexandrov et al.   Cell Reports

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Testing the theory of immune selection in cancers that break the rules of transplantation

(2009) Ariberto Fassati et al.   CANCER IMMUNOLOGY IMMUNOTHERAPY

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

A comprehensive catalogue of somatic mutations from a human cancer genome

(2009) Erin D. Pleasance et al.   NATURE

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(2009) Michael R. Stratton et al.   NATURE

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Birthday Paradox for Multi-Collisions

(2008) K. SUZUKI et al.   IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUT