Soybean‐Phakopsora pachyrhizi interactions: towards the development of next‐generation disease‐resistant plants

The Practical Role of Induced Resistance for Crop Protection

(2023) Tony Reglinski et al.   PHYTOPATHOLOGY

Data-driven predictions of the time remaining until critical global warming thresholds are reached

(2023) Noah S. Diffenbaugh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR/Cas9‐mediated editing of GmTAP1 confers enhanced resistance to Phytophthora sojae in soybean

(2023) Tengfei Liu et al.   Journal of Integrative Plant Biology

Mapping of a soybean rust resistance in PI 594756 at the Rpp1 locus

(2023) Luciane G. Barros et al.   MOLECULAR BREEDING

Altering specificity and auto-activity of plant immune receptors Sr33 and Sr50 via a rational engineering approach

(2023) Janina Tamborski et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Azelaic and hexanoic acids‐inducing resistance in soybean against Phakopsora pachyrhizi infection

(2023) Flávia Caroline Torres Rodrigues et al.   PLANT PATHOLOGY

NLR immune receptor–nanobody fusions confer plant disease resistance

(2023) Jiorgos Kourelis et al.   SCIENCE

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

(2023) Yogesh K. Gupta et al.   Nature Communications

Insights into Phakopsora pachyrhizi effector-effector interactions

(2023) Mingsheng Qi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

How do bacteria transform plants into their oasis?

(2022) Amelia H. Lovelace et al.   Cell Host & Microbe

Efficacy of RNA-spray-induced silencing of Phakopsora pachyrhizi chitin synthase genes to control soybean rust

(2022) Haruka Saito et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Decoy engineering of the receptor‐like cytoplasmic kinase StPBS1 to defend against virus infection in potato

(2022) Runyao Bai et al.   MOLECULAR PLANT PATHOLOGY

A Phakopsora pachyrhizi effector suppresses PAMP-triggered immunity and interacts with a soybean glucan endo-1,3- β -glucosidase to promote virulence

(2022) Thays Vieira Bueno et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Host‐induced silencing of a nematode chitin synthase gene enhances resistance of soybeans to both pathogenic Heterodera glycines and Fusarium oxysporum

(2022) Lingan Kong et al.   PLANT BIOTECHNOLOGY JOURNAL

Thirty years of resistance: Zig-zag through the plant immune system

(2022) Bruno Pok Man Ngou et al.   PLANT CELL

Potentiation of soybean resistance against Phakopsora pachyrhizi infection using phosphite combined with free amino acids

(2022) Bárbara B. M. Picanço et al.   PLANT PATHOLOGY

Heritable base-editing in Arabidopsis using RNA viral vectors

(2022) Degao Liu et al.   PLANT PHYSIOLOGY

New recognition specificity in a plant immune receptor by molecular engineering of its integrated domain

(2022) Stella Cesari et al.   Nature Communications

Cloning southern corn rust resistant gene RppK and its cognate gene AvrRppK from Puccinia polysora

(2022) Gengshen Chen et al.   Nature Communications

A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy

(2022) Pamela Guerillot et al.   PHYTOPATHOLOGY

Emerging principles in the design of bioengineered made-to-order plant immune receptors

(2022) Clemence Marchal et al.   CURRENT OPINION IN PLANT BIOLOGY

Rpp-Gene pyramiding confers higher resistance level to Asian soybean rust

(2022) Maiara Cecilia Panho et al.   EUPHYTICA

An NBS‐LRR protein in the Rpp1 locus negates the dominance of Rpp1 ‐mediated resistance against Phakopsora pachyrhizi in soybean

(2022) Wei Wei et al.   PLANT JOURNAL

A five-transgene cassette confers broad-spectrum resistance to a fungal rust pathogen in wheat

(2021) Ming Luo et al.   NATURE BIOTECHNOLOGY

Novel disease resistance gene paralogs created by CRISPR/Cas9 in soy

(2021) Ervin D. Nagy et al.   PLANT CELL REPORTS

Heritable gene editing using FT mobile guide RNAs and DNA viruses

(2021) Jianfeng Lei et al.   Plant Methods

Identification and characterization of a new soybean promoter induced by Phakopsora pachyrhizi, the causal agent of Asian soybean rust

(2021) L. Cabre et al.   BMC BIOTECHNOLOGY

Phosphorylation-dependent subfunctionalization of the calcium-dependent protein kinase CPK28

(2021) Melissa Bredow et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Untargeted Metabolomics Analysis by UHPLC-MS/MS of Soybean Plant in a Compatible Response to Phakopsora pachyrhizi Infection

(2021) Evandro Silva et al.   Metabolites

Development of a Csy4-processed guide RNA delivery system with soybean-infecting virus ALSV for genome editing

(2021) Yanjie Luo et al.   BMC PLANT BIOLOGY

Stop helping pathogens: engineering plant susceptibility genes for durable resistance

(2021) Hernan Garcia-Ruiz et al.   CURRENT OPINION IN BIOTECHNOLOGY

PTI-ETI crosstalk: an integrative view of plant immunity

(2021) Minhang Yuan et al.   CURRENT OPINION IN PLANT BIOLOGY

A playbook for developing disease-resistant crops through immune receptor identification and transfer

(2021) Alex Schultink et al.   CURRENT OPINION IN PLANT BIOLOGY

Highly efficient heritable genome editing in wheat using an RNA virus and bypassing tissue culture

(2021) Tingdong Li et al.   Molecular Plant

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Accurate prediction of protein structures and interactions using a three-track neural network

(2021) Minkyung Baek et al.   SCIENCE

Gene pyramiding combinations confer resistance of Asian soybean rust

(2021) Daniela Meira et al.   CROP SCIENCE

Engineering of rice varieties with enhanced resistances to both blast and bacterial blight diseases via CRISPR/Cas9

(2021) Yanbiao Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL

Climate change and the need for agricultural adaptation

(2020) Robyn Anderson et al.   CURRENT OPINION IN PLANT BIOLOGY

Unraveling Asian Soybean Rust metabolomics using mass spectrometry and Molecular Networking approach

(2020) Evandro Silva et al.   Scientific Reports

A holistic view on plant effector-triggered immunity presented as an iceberg model

(2020) Hans Thordal-Christensen   CELLULAR AND MOLECULAR LIFE SCIENCES

Characterization of three soybean landraces resistant to Asian soybean rust disease

(2020) Luciano Nobuhiro Aoyagi et al.   MOLECULAR BREEDING

Reduction of Phakopsora pachyrhizi infection on soybean through host‐ and spray‐induced gene silencing

(2020) Dongfang Hu et al.   MOLECULAR PLANT PATHOLOGY

Optimizing the PBS1 Decoy System to Confer Resistance to Potyvirus Infection in Arabidopsis and Soybean

(2020) Sarah E. Pottinger et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

De novo transcriptome of Phakopsora pachyrhizi uncovers putative effector repertoire during infection

(2020) Manjula G. Elmore et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Target base editing in soybean using a modified CRISPR/Cas9 system

(2020) Yupeng Cai et al.   PLANT BIOTECHNOLOGY JOURNAL

Field Resistance to Phakopsora pachyrhizi and Colletotrichum truncatum of Transgenic Soybean Expressing the NmDef02 Plant Defensin Gene

(2020) Natacha Soto et al.   Frontiers in Plant Science

The rise and fall of genes: origins and functions of plant pathogen pangenomes

(2020) Thomas Badet et al.   CURRENT OPINION IN PLANT BIOLOGY

Phakopsora pachyrhizi triggers the jasmonate signaling pathway during compatible interaction in soybean and GmbZIP89 plays a role of major component in the pathway

(2020) Vanessa de Almeida Barros et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Near-isogenic soybean lines carrying Asian soybean rust resistance genes for practical pathogenicity validation

(2020) Takeshi Kashiwa et al.   Scientific Reports

Global transcriptome analysis and differentially expressed genes in grapevine after application of the yeast-derived defense inducer cerevisane

(2019) Rita M. De Miccolis Angelini et al.   PEST MANAGEMENT SCIENCE

The fungal ribonuclease-like effector protein CSEP0064/BEC1054 represses plant immunity and interferes with degradation of host ribosomal RNA

(2019) Helen G. Pennington et al.   PLoS Pathogens

Engineering a Decoy Substrate in Soybean to Enable Recognition of the Soybean Mosaic Virus NIa Protease

(2019) Matthew Helm et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Effect of Selected Biopesticides in Reducing Soybean Rust (Phakopsora pachyrhizi) Development

(2019) Mathias Twizeyimana et al.   PLANT DISEASE

Pyramiding three rust-resistance genes confers a high level of resistance in soybean (Glycine max )

(2019) Naoki Yamanaka et al.   PLANT BREEDING

Prospects for Durable Resistance Against an Old Soybean Enemy: A Four-Decade Journey from Rpp1 (Resistance to Phakopsora pachyrhizi) to Rpp7

(2019) Subhash Chander et al.   Agronomy-Basel

The Plant “Resistosome”: Structural Insights into Immune Signaling

(2019) Hayden Burdett et al.   Cell Host & Microbe

Xanthomonas translucens commandeers the host rate-limiting step in ABA biosynthesis for disease susceptibility

(2019) Zhao Peng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proximity labeling of protein complexes and cell type-specific organellar proteomes in Arabidopsis enabled by TurboID

(2019) Andrea Mair et al.   eLife

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

(2019) Feng Li et al.   Nature Communications

CRISPR Crops: Plant Genome Editing Toward Disease Resistance

(2018) Thorsten Langner et al.   Annual Review of Phytopathology

Genome-wide evidence for divergent selection between populations of a major agricultural pathogen

(2018) Fanny E. Hartmann et al.   MOLECULAR ECOLOGY

Suppression or Activation of Immune Responses by Predicted Secreted Proteins of the Soybean Rust Pathogen Phakopsora pachyrhizi

(2018) Mingsheng Qi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Breeding soybeans with resistance to soybean rust (Phakopsora pachyrhizi )

(2018) Silas P. Childs et al.   PLANT BREEDING

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust

(2018) Marisa E. Miller et al.   mBio

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity

(2018) Benjamin Schwessinger et al.   mBio

Microsatellite molecular marker-assisted gene pyramiding for resistance to Asian soybean rust (ASR)

(2018) Joselaine Viganó et al.   Acta scientiarum. Agronomy.

Soybean leaves transcriptomic data dissects the phenylpropanoid pathway genes as a defence response against Phakopsora pachyrhizi

(2018) Md Zakir Hossain et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The Enhancement of Plant Disease Resistance Using CRISPR/Cas9 Technology

(2018) Virginia M. G. Borrelli et al.   Frontiers in Plant Science

Rpp1 Encodes a ULP1-NBS-LRR Protein That Controls Immunity to Phakopsora pachyrhizi in Soybean

(2018) Kerry F. Pedley et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Author Correction: Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling

(2018) Artemis Perraki et al.   NATURE

Advances in understanding obligate biotrophy in rust fungi

(2018) Cécile Lorrain et al.   NEW PHYTOLOGIST

Stacking three late blight resistance genes from wild species directly into African highland potato varieties confers complete field resistance to local blight races

(2018) Marc Ghislain et al.   PLANT BIOTECHNOLOGY JOURNAL

A new soybean rust resistance allele from PI 423972 at the Rpp4 locus

(2017) Zachary R. King et al.   MOLECULAR BREEDING

Ustilago maydis effectors and their impact on virulence

(2017) Daniel Lanver et al.   NATURE REVIEWS MICROBIOLOGY

Pathogen-inducible Ta -Lr34res expression in heterologous barley confers disease resistance without negative pleiotropic effects

(2017) Rainer Boni et al.   PLANT BIOTECHNOLOGY JOURNAL

Direct and Indirect Visualization of Bacterial Effector Delivery into Diverse Plant Cell Types during Infection

(2017) Elizabeth Henry et al.   PLANT CELL

TALE-induced bHLH transcription factors that activate a pectate lyase contribute to water soaking in bacterial spot of tomato

(2017) Allison R. Schwartz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss ofAvrSr50by somatic exchange in stem rust leads to virulence forSr50resistance in wheat

(2017) Jiapeng Chen et al.   SCIENCE

Discovery of a seventh Rpp soybean rust resistance locus in soybean accession PI 605823

(2017) Silas P. Childs et al.   THEORETICAL AND APPLIED GENETICS

Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution

(2017) Clémence Plissonneau et al.   Frontiers in Plant Science

Molecular Soybean-Pathogen Interactions

(2016) Steven A. Whitham et al.   Annual Review of Phytopathology

Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

(2016) Panagiotis F. Sarris et al.   BMC BIOLOGY

Registration of Four Near-Isogenic Soybean Lines of G00-3213 for Resistance to Asian Soybean Rust

(2016) Zachary R. King et al.   Journal of Plant Registrations

Prediction of the in planta Phakopsora pachyrhizi secretome and potential effector families

(2016) Mayra C. da C. G. de Carvalho et al.   MOLECULAR PLANT PATHOLOGY

A pigeonpea gene confers resistance to Asian soybean rust in soybean

(2016) Cintia G Kawashima et al.   NATURE BIOTECHNOLOGY

Resistance from relatives

(2016) Andrew Bent   NATURE BIOTECHNOLOGY

Asian soybean rust in Brazil: past, present, and future

(2016) Cláudia Vieira Godoy et al.   PESQUISA AGROPECUARIA BRASILEIRA

The locus for resistance to Asian soybean rust in PI 587855

(2016) Naoki Yamanaka et al.   PLANT BREEDING

Using decoys to expand the recognition specificity of a plant disease resistance protein

(2016) S. H. Kim et al.   SCIENCE

Identification of a soybean rust resistance gene in PI 567104B

(2016) Min Liu et al.   THEORETICAL AND APPLIED GENETICS

A Small Cysteine-Rich Protein from the Asian Soybean Rust Fungus, Phakopsora pachyrhizi, Suppresses Plant Immunity

(2016) Mingsheng Qi et al.   PLoS Pathogens

Identification of Phakopsora pachyrhizi Candidate Effectors with Virulence Activity in a Distantly Related Pathosystem

(2016) Sridhara G. Kunjeti et al.   Frontiers in Plant Science

Interspecies gene transfer provides soybean resistance to a fungal pathogen

(2015) Caspar Langenbach et al.   PLANT BIOTECHNOLOGY JOURNAL

A novel Phakopsora pachyrhizi resistance allele (Rpp) contributed by PI 567068A

(2015) Zachary R. King et al.   THEORETICAL AND APPLIED GENETICS

Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi

(2015) Karine de Guillen et al.   PLoS Pathogens

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

(2014) Yanpeng Wang et al.   NATURE BIOTECHNOLOGY

Molecular mapping of Asian soybean rust resistance in soybean landraces PI 594767A, PI 587905 and PI 416764

(2014) M. M. Hossain et al.   PLANT PATHOLOGY

Fine mapping of the Asian soybean rust resistance gene Rpp2 from soybean PI 230970

(2014) Neil Yu et al.   THEORETICAL AND APPLIED GENETICS

On the current status of Phakopsora pachyrhizi genome sequencing

(2014) Marco Loehrer   Frontiers in Plant Science

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

(2014) Jana Sperschneider et al.   Frontiers in Plant Science

A novel conserved mechanism for plant NLR protein pairs: the “integrated decoy” hypothesis

(2014) Stella Cesari et al.   Frontiers in Plant Science

Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

(2013) Arianne Tremblay et al.   BMC GENOMICS

Transcriptome analyses and virus induced gene silencing identify genes in the Rpp4-mediated Asian soybean rust resistance pathway

(2013) Aguida M. A. P. Morales et al.   FUNCTIONAL PLANT BIOLOGY

Controlling crop diseases using induced resistance: challenges for the future

(2013) Dale R. Walters et al.   JOURNAL OF EXPERIMENTAL BOTANY

Registration of Eight Soybean Germplasm Lines Resistant to Soybean Rust

(2013) Brian W. Diers et al.   Journal of Plant Registrations

The haustorial transcriptomes ofUromyces appendiculatusandPhakopsora pachyrhiziand their candidate effector families

(2013) Tobias I. Link et al.   MOLECULAR PLANT PATHOLOGY

UDP-glucosyltransferase UGT84A2/BRT1 is required for Arabidopsis nonhost resistance to the Asian soybean rust pathogenPhakopsora pachyrhizi

(2013) Caspar Langenbach et al.   NEW PHYTOLOGIST

Trait stacking via targeted genome editing

(2013) William M. Ainley et al.   PLANT BIOTECHNOLOGY JOURNAL

Evaluation of soybean germplasm conserved in NIAS genebank and development of mini core collections

(2012) Akito Kaga et al.   BREEDING SCIENCE

Pathogenic diversity of soybean rust in Argentina, Brazil, and Paraguay

(2012) Hajime Akamatsu et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Proteomic Analysis of Differentially Expressed Proteins in Resistant Soybean Leaves after Phakopsora pachyrhizi Infection

(2012) Yun Wang et al.   JOURNAL OF PHYTOPATHOLOGY

Identification of a new soybean rust resistance gene in PI 567102B

(2012) Shuxian Li et al.   THEORETICAL AND APPLIED GENETICS

Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm

(2012) Ki-Seung Kim et al.   THEORETICAL AND APPLIED GENETICS

Activation of plant pattern-recognition receptors by bacteria

(2011) Cécile Segonzac et al.   CURRENT OPINION IN MICROBIOLOGY

Characterization of genes Rpp2, Rpp4, and Rpp5 for resistance to soybean rust

(2011) Noelle Giacomini Lemos et al.   EUPHYTICA

Anastomosis of germ tubes and migration of nuclei in germ tube networks of the soybean rust pathogen, Phakopsora pachyrhizi

(2011) R. Vittal et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Identification of a Second Asian Soybean Rust Resistance Gene in Hyuuga Soybean

(2011) Mandy D. Kendrick et al.   PHYTOPATHOLOGY

Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves

(2011) A. Tremblay et al.   PLANT PATHOLOGY

Biphasic Gene Expression Changes Elicited by Phakopsora pachyrhizi in Soybean Correlate with Fungal Penetration and Haustoria Formation

(2011) Katherine T. Schneider et al.   PLANT PHYSIOLOGY

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear proteomic changes linked to soybean rust resistance

(2010) Bret Cooper et al.   Molecular BioSystems

Functional Analysis of the Asian Soybean Rust Resistance Pathway Mediated byRpp2

(2010) Ajay K. Pandey et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Translocation ofMagnaporthe oryzaeEffectors into Rice Cells and Their Subsequent Cell-to-Cell Movement

(2010) Chang Hyun Khang et al.   PLANT CELL

HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal PathogenBlumeria graminis

(2010) Daniela Nowara et al.   PLANT CELL

Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection

(2010) Arianne Tremblay et al.   PLANT SCIENCE

Phakopsora pachyrhizi, the causal agent of Asian soybean rust

(2009) KATHARINA GOELLNER et al.   MOLECULAR PLANT PATHOLOGY

Identification and Analyses of Candidate Genes for Rpp4-Mediated Resistance to Asian Soybean Rust in Soybean

(2009) J. D.F. Meyer et al.   PLANT PHYSIOLOGY

Molecular mapping of two loci that confer resistance to Asian rust in soybean

(2008) Danielle C. G. Silva et al.   THEORETICAL AND APPLIED GENETICS

Molecular mapping of soybean rust (Phakopsora pachyrhizi) resistance genes: discovery of a novel locus and alleles

(2008) Alexandre Garcia et al.   THEORETICAL AND APPLIED GENETICS