Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

NLR-parser: rapid annotation of plant NLR complements

(2015) Burkhard Steuernagel et al.   BIOINFORMATICS

The evolution of WRKY transcription factors

(2015) Charles I Rinerson et al.   BMC PLANT BIOLOGY

A Receptor Pair with an Integrated Decoy Converts Pathogen Disabling of Transcription Factors to Immunity

(2015) Clémentine Le Roux et al.   CELL

A Plant Immune Receptor Detects Pathogen Effectors that Target WRKY Transcription Factors

(2015) Panagiotis F. Sarris et al.   CELL

Signaling Mechanisms in Pattern-Triggered Immunity (PTI)

(2015) Jean Bigeard et al.   Molecular Plant

Rice Exo70 interacts with a fungal effector,AVR-Pii, and is required for AVR-Pii-triggered immunity

(2015) Koki Fujisaki et al.   PLANT JOURNAL

Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life

(2014) Ralf Weßling et al.   Cell Host & Microbe

Function and Interaction of the Coupled Genes Responsible for Pik-h Encoded Rice Blast Resistance

(2014) Chun Zhai et al.   PLoS One

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Effector Specialization in a Lineage of the Irish Potato Famine Pathogen

(2014) S. Dong et al.   SCIENCE

A novel conserved mechanism for plant NLR protein pairs: the “integrated decoy” hypothesis

(2014) Stella Cesari et al.   Frontiers in Plant Science

Protein–Protein Interactions in the Regulation of WRKY Transcription Factors

(2013) Yingjun Chi et al.   Molecular Plant

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding

(2013) S. Cesari et al.   PLANT CELL

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations

(2013) Florian Jupe et al.   PLANT JOURNAL

The Role of TIR-NBS and TIR-X Proteins in Plant Basal Defense Responses

(2013) R. S. Nandety et al.   PLANT PHYSIOLOGY

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

The Tomato Prf Complex Is a Molecular Trap for Bacterial Effectors Based on Pto Transphosphorylation

(2013) Vardis Ntoukakis et al.   PLoS Pathogens

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Evolution and Conservation of Plant NLR Functions

(2013) Florence Jacob et al.   Frontiers in Immunology

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures

(2012) Chris Dardick et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant pattern recognition receptor complexes at the plasma membrane

(2012) Jacqueline Monaghan et al.   CURRENT OPINION IN PLANT BIOLOGY

Structural Basis for Sequence-specific DNA Recognition by anArabidopsisWRKY Transcription Factor

(2012) Kazuhiko Yamasaki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Arms race co-evolution ofMagnaporthe oryzae AVR-Pikand ricePikgenes driven by their physical interactions

(2012) Hiroyuki Kanzaki et al.   PLANT JOURNAL

Molecular Determinants of Resistance Activation and Suppression by Phytophthora infestans Effector IPI-O

(2012) Yu Chen et al.   PLoS Pathogens

Perspectives of genomic diversification and molecular recombination towards R-gene evolution in plants

(2012) Raj Kumar Joshi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae

(2011) Yanru Hu et al.   PLANT SCIENCE

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

(2011) M. S. Mukhtar et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease

(2010) MICHAEL RAVENSDALE et al.   MOLECULAR PLANT PATHOLOGY

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Activation of an Arabidopsis Resistance Protein Is Specified by the in Planta Association of Its Leucine-Rich Repeat Domain with the Cognate Oomycete Effector

(2010) K. V. Krasileva et al.   PLANT CELL

An Effector-Targeted Protease Contributes to Defense against Phytophthora infestans and Is under Diversifying Selection in Natural Hosts

(2010) F. Kaschani et al.   PLANT PHYSIOLOGY

The AvrM Effector from Flax Rust Has a Structured C-Terminal Domain and Interacts Directly with the M Resistance Protein

(2009) Ann-Maree Catanzariti et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Loss of Function of a Proline-Containing Protein Confers Durable Disease Resistance in Rice

(2009) S. Fukuoka et al.   SCIENCE

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

(2008) M. Freeling et al.   GENOME RESEARCH

Subversion of Toll-like receptor signaling by a unique family of bacterial Toll/interleukin-1 receptor domain–containing proteins

(2008) Christine Cirl et al.   NATURE MEDICINE

From Guard to Decoy: A New Model for Perception of Plant Pathogen Effectors

(2008) R. A.L. van der Hoorn et al.   PLANT CELL

RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens

(2008) Jens Staal et al.   PLANT JOURNAL