Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors

Effector Specialization in a Lineage of the Irish Potato Famine Pathogen

(2014) S. Dong et al.   SCIENCE

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

(2014) Adnane Nemri et al.   Frontiers in Plant Science

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

(2013) Jana Sperschneider et al.   BMC GENOMICS

Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen

(2013) Patrick C. Brunner et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Bacterial Type III Secretion Assay for Delivery of Fungal Effector Proteins into Wheat

(2013) Narayana M. Upadhyaya et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Filamentous plant pathogen effectors in action

(2013) Martha C. Giraldo et al.   NATURE REVIEWS MICROBIOLOGY

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing

(2013) Diana P. Garnica et al.   PLoS One

Right-Sizing Stem-Rust Research

(2013) P. G. Pardey et al.   SCIENCE

Genome evolution in filamentous plant pathogens: why bigger can be better

(2012) Sylvain Raffaele et al.   NATURE REVIEWS MICROBIOLOGY

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

Comparative Pathogenomics Reveals Horizontally Acquired Novel Virulence Genes in Fungi Infecting Cereal Hosts

(2012) Donald M. Gardiner et al.   PLoS Pathogens

The Cysteine Rich Necrotrophic Effector SnTox1 Produced by Stagonospora nodorum Triggers Susceptibility of Wheat Lines Harboring Snn1

(2012) Zhaohui Liu et al.   PLoS Pathogens

The Emergence of Ug99 Races of the Stem Rust Fungus is a Threat to World Wheat Production

(2011) Ravi P. Singh et al.   Annual Review of Phytopathology

The role of effectors of biotrophic and hemibiotrophic fungi in infection

(2011) Markus Koeck et al.   CELLULAR MICROBIOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

The Genome Portal of the Department of Energy Joint Genome Institute

(2011) I. V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ETE: a python Environment for Tree Exploration

(2010) Jaime Huerta-Cepas et al.   BMC BIOINFORMATICS

Plants versus pathogens: an evolutionary arms race

(2010) Jonathan P. Anderson et al.   FUNCTIONAL PLANT BIOLOGY

The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection

(2010) W. Fletcher et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens

(2009) Jeffrey G Ellis et al.   CURRENT OPINION IN PLANT BIOLOGY

Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists

(2009) Gabriela Aguileta et al.   INFECTION GENETICS AND EVOLUTION

Diversity and Evolution of Effector Loci in Natural Populations of the Plant Pathogen Melampsora lini

(2009) L. G. Barrett et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Evolution of prokaryotic and eukaryotic virulence effectors

(2008) Wenbo Ma et al.   CURRENT OPINION IN PLANT BIOLOGY