Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

Gene expression and proteomic analysis of the formation of Phakopsora pachyrhizi appressoria

(2012) Christine L Stone et al.   BMC GENOMICS

Identification of a new soybean rust resistance gene in PI 567102B

(2012) Shuxian Li et al.   THEORETICAL AND APPLIED GENETICS

Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi

(2011) Junhuan Xu et al.   BMC GENOMICS

Systematic bias in high-throughput sequencing data and its correction by BEADS

(2011) Ming-Sin Cheung et al.   NUCLEIC ACIDS RESEARCH

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

SNP assay to detect the ‘Hyuuga’ red-brown lesion resistance gene for Asian soybean rust

(2010) Maria J. Monteros et al.   THEORETICAL AND APPLIED GENETICS

Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici

(2009) Chuntao Yin et al.   BMC GENOMICS

Identification and Analyses of Candidate Genes for Rpp4-Mediated Resistance to Asian Soybean Rust in Soybean

(2009) J. D.F. Meyer et al.   PLANT PHYSIOLOGY

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

(2009) Piotr J Balwierz et al.   GENOME BIOLOGY

A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR

(2008) Robert G Rutledge et al.   BMC BIOTECHNOLOGY

Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici

(2008) Yonghong Zhang et al.   BMC GENOMICS

Proteomic profile of dormant Trichophyton Rubrum conidia

(2008) Wenchuan Leng et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Analysis of Expressed Sequence Tags from Uromyces appendiculatus Hyphae and Haustoria and Their Comparison to Sequences from Other Rust Fungi

(2008) D. P. Puthoff et al.   PHYTOPATHOLOGY