Dual RNA-seq revealsMeloidogyne graminicolatranscriptome and candidate effectors during the interaction with rice plants

Members of the Meloidogyne Avirulence Protein Family Contain Multiple Plant Ligand-Like Motifs

(2017) William B. Rutter et al.   PHYTOPATHOLOGY

Plant-Parasitic Nematode Infections in Rice: Molecular and Cellular Insights

(2014) Tina Kyndt et al.   Annual Review of Phytopathology

Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida

(2014) Peter Thorpe et al.   BMC GENOMICS

Mining Novel Effector Proteins from the Esophageal Gland Cells of Meloidogyne incognita

(2014) William B. Rutter et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

High-Resolution Transcript Profiling of the Atypical Biotrophic Interaction betweenTheobroma cacaoand the Fungal PathogenMoniliophthora perniciosa

(2014) Paulo José Pereira Lima Teixeira et al.   PLANT CELL

In Planta Processing and Glycosylation of a Nematode CLAVATA3/ENDOSPERM SURROUNDING REGION-Like Effector and Its Interaction with a Host CLAVATA2-Like Receptor to Promote Parasitism

(2014) Shiyan Chen et al.   PLANT PHYSIOLOGY

Meloidogyne incognita - rice (Oryza sativa) interaction: a new model system to study plant-root-knot nematode interactions in monocotyledons

(2014) Phong Vũ Nguyễn et al.   Rice

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity

(2014) Amy H. Buck et al.   Nature Communications

Apoplastic Venom Allergen-like Proteins of Cyst Nematodes Modulate the Activation of Basal Plant Innate Immunity by Cell Surface Receptors

(2014) Jose L. Lozano-Torres et al.   PLoS Pathogens

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

(2014) James A Cotton et al.   GENOME BIOLOGY

Enzymology of the nematode cuticle: A potential drug target?

(2014) Antony P. Page et al.   International Journal for Parasitology-Drugs and Drug Resistance

Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

(2013) Arianne Tremblay et al.   BMC GENOMICS

Evolutionarily conserved CLE peptide signaling in plant development, symbiosis, and parasitism

(2013) Kaori Miyawaki et al.   CURRENT OPINION IN PLANT BIOLOGY

The Role of Metallothionein in Oxidative Stress

(2013) Branislav Ruttkay-Nedecky et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Analysis of the transcriptome ofHirschmanniella oryzaeto explore potential survival strategies and host-nematode interactions

(2013) Lander Bauters et al.   MOLECULAR PLANT PATHOLOGY

Nematode effector proteins: an emerging paradigm of parasitism

(2013) Melissa G. Mitchum et al.   NEW PHYTOLOGIST

De Novo Transcriptome Sequencing and Analysis for Venturia inaequalis, the Devastating Apple Scab Pathogen

(2013) Karnika Thakur et al.   PLoS One

Transcriptional Reprogramming of Wheat and the Hemibiotrophic Pathogen Septoria tritici during Two Phases of the Compatible Interaction

(2013) Fen Yang et al.   PLoS One

Identification of Novel Target Genes for Safer and More Specific Control of Root-Knot Nematodes from a Pan-Genome Mining

(2013) Etienne G. J. Danchin et al.   PLoS Pathogens

Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells

(2013) Michaëel Quentin et al.   Frontiers in Plant Science

Role of Nematode Peptides and Other Small Molecules in Plant Parasitism

(2012) Melissa G. Mitchum et al.   Annual Review of Phytopathology

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Identification of candidate effector genes in the transcriptome of the rice root knot nematodeMeloidogyne graminicola

(2012) Annelies Haegeman et al.   MOLECULAR PLANT PATHOLOGY

A Novel Effector Protein, MJ-NULG1a, Targeted to Giant Cell Nuclei Plays a Role in Meloidogyne javanica Parasitism

(2012) Borong Lin et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei

(2012) Maëlle Jaouannet et al.   NEW PHYTOLOGIST

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Extracellular Vesicles from Parasitic Helminths Contain Specific Excretory/Secretory Proteins and Are Internalized in Intestinal Host Cells

(2012) Antonio Marcilla et al.   PLoS One

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

Dual disease resistance mediated by the immune receptor Cf-2 in tomato requires a common virulence target of a fungus and a nematode

(2012) J. L. Lozano-Torres et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional roles of effectors of plant-parasitic nematodes

(2011) Annelies Haegeman et al.   GENE

C. elegans metallothioneins: response to and defence against ROS toxicity

(2011) Sukaina Zeitoun-Ghandour et al.   Molecular BioSystems

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction

(2011) DIANA FERNANDEZ et al.   MOLECULAR PLANT PATHOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

FrameDP: sensitive peptide detection on noisy matured sequences

(2009) J. Gouzy et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Helminth immunoregulation: The role of parasite secreted proteins in modulating host immunity

(2009) James P. Hewitson et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Structural and Functional Diversity ofCLAVATA3/ESR(CLE)-Like Genes from the Potato Cyst NematodeGlobodera rostochiensis

(2009) Shun-Wen Lu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

(2008) C. H. Opperman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential

(2008) Stéphane Bellafiore et al.   PLoS Pathogens