Identification of Novel Target Genes for Safer and More Specific Control of Root-Knot Nematodes from a Pan-Genome Mining

Diversity and Evolution of Root-Knot Nematodes, GenusMeloidogyne: New Insights from the Genomic Era

(2013) Philippe Castagnone-Sereno et al.   Annual Review of Phytopathology

Nematode effector proteins: an emerging paradigm of parasitism

(2013) Melissa G. Mitchum et al.   NEW PHYTOLOGIST

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei

(2012) Maëlle Jaouannet et al.   NEW PHYTOLOGIST

siRNAs Trigger Efficient Silencing of a Parasitism Gene in Plant Parasitic Root-Knot Nematodes

(2012) Marie-Jeanne Arguel et al.   Genes

Advances in Insect Phylogeny at the Dawn of the Postgenomic Era

(2011) Michelle D. Trautwein et al.   Annual Review of Entomology

Identifying discriminative classification-based motifs in biological sequences

(2011) Celine Vens et al.   BIOINFORMATICS

Strategies for transgenic nematode control in developed and developing world crops

(2011) Howard J Atkinson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Functional roles of effectors of plant-parasitic nematodes

(2011) Annelies Haegeman et al.   GENE

The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes

(2011) J. P. Hamilton et al.   Database-The Journal of Biological Databases and Curation

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Short interfering RNA-mediated knockdown of drosha and pasha in undifferentiated Meloidogyne incognita eggs leads to irregular growth and embryonic lethality

(2010) Johnathan J. Dalzell et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Root-knot nematodes (Meloidogyne spp.) in Europe

(2010) Wim Wesemael et al.   NEMATOLOGY

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNAi and Functional Genomics in Plant Parasitic Nematodes

(2009) M. N. Rosso et al.   Annual Review of Phytopathology

The Genomes of Root-Knot Nematodes

(2009) David McK. Bird et al.   Annual Review of Phytopathology

Short interfering RNA-mediated gene silencing in Globodera pallida and Meloidogyne incognita infective stage juveniles

(2009) Johnathan J. Dalzell et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

(2009) Hanny van Megen et al.   NEMATOLOGY

Characterisation by RNAi of pioneer genes expressed in the dorsal pharyngeal gland cell of Heterodera glycines and the effects of combinatorial RNAi

(2008) M. Bakhetia et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

(2008) C. H. Opperman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA