De Novo Transcriptome Sequencing and Analysis for Venturia inaequalis, the Devastating Apple Scab Pathogen

De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments

(2012) Parul Gahlan et al.   BMC GENOMICS

The Predicted Secretome of the Plant Pathogenic Fungus Fusarium graminearum: A Refined Comparative Analysis

(2012) Neil A. Brown et al.   PLoS One

Sequence Divergent RXLR Effectors Share a Structural Fold Conserved across Plant Pathogenic Oomycete Species

(2012) Joe Win et al.   PLoS Pathogens

Revision of the Nomenclature of the Differential Host-Pathogen Interactions of Venturia inaequalis and Malus

(2011) Vincent G.M. Bus et al.   Annual Review of Phytopathology

Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi

(2011) Brian C King et al.   Biotechnology for Biofuels

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map

(2011) Jean-Marc Celton et al.   BMC BIOLOGY

How filamentous pathogens co-opt plants: the ins and outs of fungal effectors

(2011) Ronnie de Jonge et al.   CURRENT OPINION IN PLANT BIOLOGY

How do oomycete effectors interfere with plant life?

(2011) Joost HM Stassen et al.   CURRENT OPINION IN PLANT BIOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2011) N. D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Functional analysis and expression profiling of HcrVf1 and HcrVf2 for development of scab resistant cisgenic and intragenic apples

(2011) Sameer G. Joshi et al.   PLANT MOLECULAR BIOLOGY

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Cytochrome P450 enzymes in the fungal kingdom

(2010) B. Črešnar et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

(2010) Sylvain Raffaele et al.   BMC GENOMICS

Recent developments in effector biology of filamentous plant pathogens

(2010) Ricardo Oliva et al.   CELLULAR MICROBIOLOGY

Venturia inaequalis: the causal agent of apple scab

(2010) JOANNA K. BOWEN et al.   MOLECULAR PLANT PATHOLOGY

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Ancient class of translocated oomycete effectors targets the host nucleus

(2010) S. Schornack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants

(2010) R. de Jonge et al.   SCIENCE

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

(2009) Shrinivasrao P Mane et al.   BMC GENOMICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Candidate effector gene identification in the ascomycete fungal phytopathogenVenturia inaequalisby expressed sequence tag analysis

(2009) JOANNA K. BOWEN et al.   MOLECULAR PLANT PATHOLOGY

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Pep1, a Secreted Effector Protein of Ustilago maydis, Is Required for Successful Invasion of Plant Cells

(2009) Gunther Doehlemann et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Fungal cytochrome P450 database

(2008) Jongsun Park et al.   BMC GENOMICS

The secretome of the maize pathogen Ustilago maydis

(2008) Olaf Mueller et al.   FUNGAL GENETICS AND BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

On the Origin and Spread of the Scab Disease of Apple: Out of Central Asia

(2008) Pierre Gladieux et al.   PLoS One

Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis

(2008) Darren M. Soanes et al.   PLoS One