Gene expression regulatory networks inTrypanosoma brucei: insights into the role of the mRNA-binding proteome

The DRBD13 RNA binding protein is involved in the insect-stage differentiation process ofTrypanosoma brucei

(2015) Bhaskar Anand Jha et al.   FEBS LETTERS

Advancing Trypanosoma brucei genome annotation through ribosome profiling and spliced leader mapping

(2015) Marilyn Parsons et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Conserved mRNA-binding proteomes in eukaryotic organisms

(2015) Ana M Matia-González et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Polysomes of Trypanosoma brucei: Association with Initiation Factors and RNA-Binding Proteins

(2015) Cornelia Klein et al.   PLoS One

Two related trypanosomatid eIF4G homologues have functional differences compatible with distinct roles during translation initiation

(2015) Danielle MN Moura et al.   RNA Biology

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

(2015) Benedikt M. Beckmann et al.   Nature Communications

Conserved mRNA-binding proteomes in eukaryotic organisms

(2015) Ana M Matia-González et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

DERA is the human deoxyribose phosphate aldolase and is involved in stress response

(2014) Lisa Salleron et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Depletion of the Trypanosome Pumilio Domain Protein PUF2 or of Some Other Essential Proteins Causes Transcriptome Changes Related to Coding Region Length

(2014) Bhaskar Anand Jha et al.   EUKARYOTIC CELL

Trypanosoma brucei Translation Initiation Factor Homolog EIF4E6 Forms a Tripartite Cytosolic Complex with EIF4G5 and a Capping Enzyme Homolog

(2014) Eden R. Freire et al.   EUKARYOTIC CELL

The polysome-associated proteins Scp160 and Bfr1 prevent P body formation under normal growth conditions

(2014) J. Weidner et al.   JOURNAL OF CELL SCIENCE

Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages

(2014) Juan-José Vasquez et al.   NUCLEIC ACIDS RESEARCH

Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks

(2014) Aditi Singh et al.   NUCLEIC ACIDS RESEARCH

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

(2014) Erik L.L. Sonnhammer et al.   NUCLEIC ACIDS RESEARCH

The mRNAs associated to a zinc finger protein fromTrypanosoma cruzishift during stress conditions

(2014) Lysangela Ronalte Alves et al.   RNA Biology

A Genome-Wide Tethering Screen Reveals Novel Potential Post-Transcriptional Regulators in Trypanosoma brucei

(2014) Esteban D. Erben et al.   PLoS Pathogens

The CAF1-NOT complex of trypanosomes

(2014) Esteban Erben et al.   Frontiers in Genetics

Altered Ribostasis: RNA-Protein Granules in Degenerative Disorders

(2013) Mani Ramaswami et al.   CELL

Quantitative proteomic analysis reveals concurrent RNA-protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae

(2013) D. M. Klass et al.   GENOME RESEARCH

The eIF4E subunits of two distinct trypanosomatid eIF4F complexes are subjected to differential post-translational modifications associated to distinct growth phases in culture

(2013) Mariana M.C. Pereira et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Genome-wide dissection of the quorum sensing signalling pathway in Trypanosoma brucei

(2013) Binny M. Mony et al.   NATURE

System-wide identification of RNA-binding proteins by interactome capture

(2013) Alfredo Castello et al.   Nature Protocols

The RNA-binding protein repertoire of embryonic stem cells

(2013) S Chul Kwon et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Global identification of conserved post-transcriptional regulatory programs in trypanosomatids

(2013) H. S. Najafabadi et al.   NUCLEIC ACIDS RESEARCH

Differential Localization of the Two T. brucei Poly(A) Binding Proteins to the Nucleus and RNP Granules Suggests Binding to Distinct mRNA Pools

(2013) Susanne Kramer et al.   PLoS One

The Trypanosome Pumilio Domain Protein PUF5

(2013) Bhaskar Anand Jha et al.   PLoS One

Paraspeckle formation during the biogenesis of long non-coding RNAs

(2013) Takao Naganuma et al.   RNA Biology

The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation

(2013) A. Fadda et al.   RNA

RNA-binding proteins in Mendelian disease

(2013) Alfredo Castello et al.   TRENDS IN GENETICS

The Regulation of Trypanosome Gene Expression by RNA-Binding Proteins

(2013) Christine Clayton   PLoS Pathogens

Post-Transcriptional Regulation of the Trypanosome Heat Shock Response by a Zinc Finger Protein

(2013) Dorothea Droll et al.   PLoS Pathogens

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

Evolutionary Conservation and Diversification of the Translation Initiation Apparatus in Trypanosomatids

(2012) Alexandra Zinoviev et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

The Trypanosoma brucei CCCH zinc finger proteins ZC3H12 and ZC3H13

(2012) Benard Aswani Ouna et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei

(2012) Martin Wurst et al.   MOLECULAR MICROBIOLOGY

Global analysis of yeast mRNPs

(2012) Sarah F Mitchell et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs

(2012) Valentin Färber et al.   NUCLEIC ACIDS RESEARCH

The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism

(2012) A. Das et al.   RNA

Developmental Progression to Infectivity in Trypanosoma brucei Triggered by an RNA-Binding Protein

(2012) N. G. Kolev et al.   SCIENCE

Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome

(2011) Shulamit Michaeli   Future Microbiology

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

(2011) S. Alsford et al.   GENOME RESEARCH

The Trypanosoma brucei zinc finger protein ZC3H18 is involved in differentiation

(2011) Corinna Benz et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

ALBA proteins are stage regulated during trypanosome development in the tsetse fly and participate in differentiation

(2011) Ines Subota et al.   MOLECULAR BIOLOGY OF THE CELL

The post-transcriptional trans-acting regulator, TbZFP3, co-ordinates transmission-stage enriched mRNAs in Trypanosoma brucei

(2011) Pegine B. Walrad et al.   NUCLEIC ACIDS RESEARCH

A novel 4E-interacting protein in Leishmania is involved in stage-specific translation pathways

(2011) Alexandra Zinoviev et al.   NUCLEIC ACIDS RESEARCH

Alba-Domain Proteins of Trypanosoma brucei Are Cytoplasmic RNA-Binding Proteins That Interact with the Translation Machinery

(2011) Jan Mani et al.   PLoS One

Is There a Classical Nonsense-Mediated Decay Pathway in Trypanosomes?

(2011) Praveen Delhi et al.   PLoS One

snRNA-specific role of SMN in trypanosome snRNP biogenesis in vivo

(2011) Nicolas Jaé et al.   RNA Biology

The trypanosome Pumilio-domain protein PUF7 associates with a nuclear cyclophilin and is involved in ribosomal RNA maturation

(2010) Dorothea Droll et al.   FEBS LETTERS

The four trypanosomatid eIF4E homologues fall into two separate groups, with distinct features in primary sequence and biological properties

(2010) Eden R. Freire et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae

(2010) Nikoleta G. Tsvetanova et al.   PLoS One

A Screen for RNA-Binding Proteins in Yeast Indicates Dual Functions for Many Enzymes

(2010) Tanja Scherrer et al.   PLoS One

PUF proteins: repression, activation and mRNA localization

(2010) Tara Quenault et al.   TRENDS IN CELL BIOLOGY

Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons

(2009) Rafael Queiroz et al.   BMC GENOMICS

The role of deadenylation in the degradation of unstable mRNAs in trypanosomes

(2009) Angela Schwede et al.   NUCLEIC ACIDS RESEARCH

Trypanosoma brucei PUF9 Regulates mRNAs for Proteins Involved in Replicative Processes over the Cell Cycle

(2009) Stuart K. Archer et al.   PLoS Pathogens

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Construction of a reading frame–independent yeast two-hybrid vector system for site-specific recombinational cloning and protein interaction screening

(2008) Richard H. Maier et al.   BIOTECHNIQUES

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

A role for Q/N-rich aggregation-prone regions in P-body localization

(2008) M. A. M. Reijns et al.   JOURNAL OF CELL SCIENCE

Single-locus targeting constructs for reliable regulated RNAi and transgene expression in Trypanosoma brucei

(2008) Sam Alsford et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

An RNAi screen of the RRM-domain proteins of Trypanosoma brucei

(2008) Martin Wurst et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Multifunctional deadenylase complexes diversify mRNA control

(2008) Aaron C. Goldstrohm et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The RNA-binding protein Tb DRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes

(2008) Antonio M. Estévez   NUCLEIC ACIDS RESEARCH

A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells

(2008) Angela Schwede et al.   NUCLEIC ACIDS RESEARCH