Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks

A Y2H-seq approach defines the human protein methyltransferase interactome

(2013) Mareike Weimann et al.   NATURE METHODS

Mechanisms and function of substrate recruitment by F-box proteins

(2013) Jeffrey R. Skaar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Differential Localization of the Two T. brucei Poly(A) Binding Proteins to the Nucleus and RNP Granules Suggests Binding to Distinct mRNA Pools

(2013) Susanne Kramer et al.   PLoS One

The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation

(2013) A. Fadda et al.   RNA

ATAXIN-2 Activates PERIOD Translation to Sustain Circadian Rhythms in Drosophila

(2013) C. Lim et al.   SCIENCE

A Role for Drosophila ATX2 in Activation of PER Translation and Circadian Behavior

(2013) Y. Zhang et al.   SCIENCE

Post-Transcriptional Regulation of the Trypanosome Heat Shock Response by a Zinc Finger Protein

(2013) Dorothea Droll et al.   PLoS Pathogens

Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2

(2012) Jennifer D Lewis et al.   BMC GENOMICS

Multiple RNA-binding proteins function combinatorially to control the soma-restricted expression pattern of the E3 ligase subunit ZIF-1

(2012) Marieke Oldenbroek et al.   DEVELOPMENTAL BIOLOGY

Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis

(2012) S. Swinnen et al.   GENOME RESEARCH

The Trypanosoma brucei CCCH zinc finger proteins ZC3H12 and ZC3H13

(2012) Benard Aswani Ouna et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Evidence Providing New Insights into TOB-Promoted Deadenylation and Supporting a Link between TOB's Deadenylation-Enhancing and Antiproliferative Activities

(2012) N. Ezzeddine et al.   MOLECULAR AND CELLULAR BIOLOGY

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

(2012) Alexander G. Baltz et al.   MOLECULAR CELL

Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei

(2012) Martin Wurst et al.   MOLECULAR MICROBIOLOGY

Depletion of Trypanosome CTR9 Leads to Gene Expression Defects

(2012) Benard A. Ouna et al.   PLoS One

Comparative SILAC Proteomic Analysis of Trypanosoma brucei Bloodstream and Procyclic Lifecycle Stages

(2012) Michael D. Urbaniak et al.   PLoS One

The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism

(2012) A. Das et al.   RNA

AUF-1 and YB-1 are critical determinants of  -globin mRNA expression in erythroid cells

(2011) S. van Zalen et al.   BLOOD

Poly(A)-Specific Ribonuclease (PARN-1) Function in Stage-Specific mRNA Turnover in Trypanosoma brucei

(2011) Christopher J. Utter et al.   EUKARYOTIC CELL

Cellular Effects and Epistasis among Three Determinants of Adaptation in Experimental Populations of Saccharomyces cerevisiae

(2011) Lucas S. Parreiras et al.   EUKARYOTIC CELL

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

(2011) S. Alsford et al.   GENOME RESEARCH

A Role for the Poly(A)-binding Protein Pab1p in PUF Protein-mediated Repression

(2011) Jacqueline J. Chritton et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Trypanosoma brucei zinc finger protein ZC3H18 is involved in differentiation

(2011) Corinna Benz et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The novel gene twenty-four defines a critical translational step in the Drosophila clock

(2011) Chunghun Lim et al.   NATURE

The post-transcriptional trans-acting regulator, TbZFP3, co-ordinates transmission-stage enriched mRNAs in Trypanosoma brucei

(2011) Pegine B. Walrad et al.   NUCLEIC ACIDS RESEARCH

A novel 4E-interacting protein in Leishmania is involved in stage-specific translation pathways

(2011) Alexandra Zinoviev et al.   NUCLEIC ACIDS RESEARCH

Repression of Mitochondrial Translation, Respiration and a Metabolic Cycle-Regulated Gene, SLF1, by the Yeast Pumilio-Family Protein Puf3p

(2011) Marc Chatenay-Lapointe et al.   PLoS One

Is There a Classical Nonsense-Mediated Decay Pathway in Trypanosomes?

(2011) Praveen Delhi et al.   PLoS One

The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation

(2011) T. Manful et al.   RNA

The Pre-mRNA Splicing Machinery of Trypanosomes: Complex or Simplified?

(2010) Arthur Günzl   EUKARYOTIC CELL

Tethering of Poly(A)-binding Protein Interferes with Non-translated mRNA Decay from the 5′ End in Yeast

(2010) Tatsuhisa Tsuboi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The four trypanosomatid eIF4E homologues fall into two separate groups, with distinct features in primary sequence and biological properties

(2010) Eden R. Freire et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Localization to, and Effects of Pbp1, Pbp4, Lsm12, Dhh1, and Pab1 on Stress Granules in Saccharomyces cerevisiae

(2010) Kylie D. Swisher et al.   PLoS One

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae

(2010) Nikoleta G. Tsvetanova et al.   PLoS One

Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids

(2010) Susanne Kramer et al.   TRENDS IN PARASITOLOGY

The role of AUF1 in regulated mRNA decay

(2010) Frances M. Gratacós et al.   Wiley Interdisciplinary Reviews-RNA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Execution of nonsense-mediated mRNA decay: what defines a substrate?

(2009) Indrani Rebbapragada et al.   CURRENT OPINION IN CELL BIOLOGY

Polymorphisms in Multiple Genes Contribute to the Spontaneous Mitochondrial Genome Instability of Saccharomyces cerevisiae S288C Strains

(2009) L. N. Dimitrov et al.   GENETICS

Evolutionary changes in the Leishmania eIF4F complex involve variations in the eIF4E–eIF4G interactions

(2009) Yael Yoffe et al.   NUCLEIC ACIDS RESEARCH

The role of deadenylation in the degradation of unstable mRNAs in trypanosomes

(2009) Angela Schwede et al.   NUCLEIC ACIDS RESEARCH

Identification of the HIT-45 protein from Trypanosoma brucei as an FHIT protein/dinucleoside triphosphatase: Substrate specificity studies on the recombinant and endogenous proteins

(2009) H. Banerjee et al.   RNA

Learning a Prior on Regulatory Potential from eQTL Data

(2009) Su-In Lee et al.   PLoS Genetics

Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2  phosphorylation at Thr169

(2008) S. Kramer et al.   JOURNAL OF CELL SCIENCE

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

(2008) Yann Saint-Georges et al.   PLoS One

Identification and Dissection of a Complex DNA Repair Sensitivity Phenotype in Baker's Yeast

(2008) Ann Demogines et al.   PLoS Genetics