Depletion of the Trypanosome Pumilio Domain Protein PUF2 or of Some Other Essential Proteins Causes Transcriptome Changes Related to Coding Region Length

Trypanosome MKT1 and the RNA-binding protein ZC3H11: interactions and potential roles in post-transcriptional regulatory networks

(2014) Aditi Singh et al.   NUCLEIC ACIDS RESEARCH

The CAF1-NOT complex of trypanosomes

(2014) Esteban Erben et al.   Frontiers in Genetics

Gene Expression Is Circular: Factors for mRNA Degradation Also Foster mRNA Synthesis

(2013) Gal Haimovich et al.   CELL

Basal Splicing Factors Regulate the Stability of Mature mRNAs in Trypanosomes

(2013) Sachin Kumar Gupta et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nucleolar proteins regulate stage-specific gene expression and ribosomal RNA maturation inTrypanosoma brucei

(2013) Gabriela Schumann Burkard et al.   MOLECULAR MICROBIOLOGY

The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability

(2013) Sachin Kumar Gupta et al.   NUCLEIC ACIDS RESEARCH

The Trypanosome Pumilio Domain Protein PUF5

(2013) Bhaskar Anand Jha et al.   PLoS One

The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation

(2013) A. Fadda et al.   RNA

The Regulation of Trypanosome Gene Expression by RNA-Binding Proteins

(2013) Christine Clayton   PLoS Pathogens

Post-Transcriptional Regulation of the Trypanosome Heat Shock Response by a Zinc Finger Protein

(2013) Dorothea Droll et al.   PLoS Pathogens

The Trypanosoma brucei CCCH zinc finger proteins ZC3H12 and ZC3H13

(2012) Benard Aswani Ouna et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Expression of the RNA recognition motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei

(2012) Martin Wurst et al.   MOLECULAR MICROBIOLOGY

Depletion of Trypanosome CTR9 Leads to Gene Expression Defects

(2012) Benard A. Ouna et al.   PLoS One

ePAT: A simple method to tag adenylated RNA to measure poly(A)-tail length and other 3' RACE applications

(2012) A. Janicke et al.   RNA

Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide

(2011) Eun-Hee Park et al.   BMC GENOMICS

Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome

(2011) Shulamit Michaeli   Future Microbiology

The multifunctional Ccr4–Not complex directly promotes transcription elongation

(2011) Jennifer A. Kruk et al.   GENES & DEVELOPMENT

High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome

(2011) S. Alsford et al.   GENOME RESEARCH

The Puf-Family RNA-Binding Protein Puf2 Controls Sporozoite Conversion to Liver Stages in the Malaria Parasite

(2011) Katja Müller et al.   PLoS One

Is There a Classical Nonsense-Mediated Decay Pathway in Trypanosomes?

(2011) Praveen Delhi et al.   PLoS One

The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation

(2011) T. Manful et al.   RNA

Alternate Modes of Cognate RNA Recognition by Human PUMILIO Proteins

(2011) Gang Lu et al.   STRUCTURE

Transition of Plasmodium Sporozoites into Liver Stage-Like Forms Is Regulated by the RNA Binding Protein Pumilio

(2011) Carina S. S. Gomes-Santos et al.   PLoS Pathogens

The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization

(2010) Patrick PC Tam et al.   BMC PLANT BIOLOGY

RNA Polymerase II Subunits Link Transcription and mRNA Decay to Translation

(2010) Liat Harel-Sharvit et al.   CELL

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

The trypanosome Pumilio-domain protein PUF7 associates with a nuclear cyclophilin and is involved in ribosomal RNA maturation

(2010) Dorothea Droll et al.   FEBS LETTERS

Multiple mRNA Decapping Enzymes in Mammalian Cells

(2010) Man-Gen Song et al.   MOLECULAR CELL

Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins

(2010) Andrew G. Cridge et al.   NUCLEIC ACIDS RESEARCH

PUF proteins: repression, activation and mRNA localization

(2010) Tara Quenault et al.   TRENDS IN CELL BIOLOGY

Trans-acting proteins regulating mRNA maturation, stability and translation in trypanosomatids

(2010) Susanne Kramer et al.   TRENDS IN PARASITOLOGY

Posttranscriptional control and the role of RNA-binding proteins in gene regulation in trypanosomatid protozoan parasites

(2010) Sandra M. Fernández-Moya et al.   Wiley Interdisciplinary Reviews-RNA

Roles of Puf proteins in mRNA degradation and translation

(2010) Melanie A. Miller et al.   Wiley Interdisciplinary Reviews-RNA

PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins

(2010) Markus Hafner et al.   Jove-Journal of Visualized Experiments

Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons

(2009) Rafael Queiroz et al.   BMC GENOMICS

Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei

(2009) Bryan C Jensen et al.   BMC GENOMICS

Hydrolase Regulates NAD+Metabolites and Modulates Cellular Redox

(2009) Lei Tong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CLIP: Construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo

(2009) Zhen Wang et al.   METHODS

A 3′UTR Pumilio-Binding Element Directs Translational Activation in Olfactory Sensory Neurons

(2009) Julia A. Kaye et al.   NEURON

Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism

(2009) M. Z. Stern et al.   RNA

Trypanosoma brucei PUF9 Regulates mRNAs for Proteins Involved in Replicative Processes over the Cell Cycle

(2009) Stuart K. Archer et al.   PLoS Pathogens

Tethering of proteins to RNAs by bacteriophage proteins

(2008) Cecile Keryer-Bibens et al.   BIOLOGY OF THE CELL

Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes

(2008) V. Goler-Baron et al.   GENES & DEVELOPMENT

Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2  phosphorylation at Thr169

(2008) S. Kramer et al.   JOURNAL OF CELL SCIENCE

A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells

(2008) Angela Schwede et al.   NUCLEIC ACIDS RESEARCH

Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA

(2008) Gelina S. Kopeina et al.   NUCLEIC ACIDS RESEARCH

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

(2008) Yann Saint-Georges et al.   PLoS One

Regulation of a transmembrane protein gene family by the small RNA-binding proteins TbUBP1 and TbUBP2

(2007) Claudia Hartmann et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY