Molecular mechanisms of adaptation and speciation: why do we need an integrative approach?

The Genetic Basis of Pheromone Evolution in Moths

(2016) Astrid T. Groot et al.   Annual Review of Entomology

Amino Acid Change in an Orchid Desaturase Enables Mimicry of the Pollinator’s Sex Pheromone

(2016) Khalid E.M. Sedeek et al.   CURRENT BIOLOGY

Color phenotypes are under similar genetic control in two distantly related species of Timema stick insect

(2016) Aaron A. Comeault et al.   EVOLUTION

The role of isoforms in the evolution of cryptic coloration inPeromyscusmice

(2016) Ricardo Mallarino et al.   MOLECULAR ECOLOGY

Geographic cline analysis as a tool for studying genome-wide variation: a case study of pollinator-mediated divergence in a monkeyflower

(2016) Sean Stankowski et al.   MOLECULAR ECOLOGY

Targeted re-sequencing confirms the importance of chemosensory genes in aphid host race differentiation

(2016) Isobel Eyres et al.   MOLECULAR ECOLOGY

Selection on a Genetic Polymorphism Counteracts Ecological Speciation in a Stick Insect

(2015) Aaron A. Comeault et al.   CURRENT BIOLOGY

The geography of divergence with gene flow facilitates multitrait adaptation and the evolution of pollinator isolation inMimulus aurantiacus

(2015) Sean Stankowski et al.   EVOLUTION

Strong premating reproductive isolation drives incipient speciation inMimulus aurantiacus

(2015) James M. Sobel et al.   EVOLUTION

The Functional Basis of Wing Patterning in Heliconius Butterflies: The Molecules Behind Mimicry

(2015) M. R. Kronforst et al.   GENETICS

MYB-FL controls gain and loss of floral UV absorbance, a key trait affecting pollinator preference and reproductive isolation

(2015) Hester Sheehan et al.   NATURE GENETICS

Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers

(2015) Sean Stankowski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modeling the two-locus architecture of divergent pollinator adaptation: how variation inSADparalogs affects fitness and evolutionary divergence in sexually deceptive orchids

(2015) Shuqing Xu et al.   Ecology and Evolution

A stranger in a strange land: the utility and interpretation of heterologous expression

(2015) Elena M. Kramer   Frontiers in Plant Science

Genomic data integration for ecological and evolutionary traits in non-model organisms

(2014) Denis Tagu et al.   BMC GENOMICS

Genic rather than genome-wide differences between sexually deceptiveOphrysorchids with different pollinators

(2014) Khalid E. M. Sedeek et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Floral volatile alleles can contribute to pollinator-mediated reproductive isolation in monkeyflowers (Mimulus)

(2014) Kelsey J. R. P. Byers et al.   PLANT JOURNAL

Multiple recent co-options of Optix associated with novel traits in adaptive butterfly wing radiations

(2014) Arnaud Martin et al.   EvoDevo

Identifying the genes underlying quantitative traits: a rationale for the QTN programme

(2014) Young Wha Lee et al.   AoB Plants

Specific-gene studies of evolutionary mechanisms in an age of genome-wide surveying

(2013) Ward B. Watt   Annals of the New York Academy of Sciences

Tight Genetic Linkage of Prezygotic Barrier Loci Creates a Multifunctional Speciation Island in Petunia

(2013) Katrin Hermann et al.   CURRENT BIOLOGY

Evolutionary change driven by metal exposure as revealed by coding SNP genome scan in wild yellow perch (Perca flavescens)

(2013) Sébastien Bélanger-Deschênes et al.   ECOTOXICOLOGY

CHROMOSOMAL REARRANGEMENTS AND THE GENETICS OF REPRODUCTIVE BARRIERS INMIMULUS(MONKEY FLOWERS)

(2013) Lila Fishman et al.   EVOLUTION

GENETIC HITCHHIKING AND THE DYNAMIC BUILDUP OF GENOMIC DIVERGENCE DURING SPECIATION WITH GENE FLOW

(2013) Samuel M. Flaxman et al.   EVOLUTION

Evolutionary biochemistry: revealing the historical and physical causes of protein properties

(2013) Michael J. Harms et al.   NATURE REVIEWS GENETICS

Functional and evolutionary implications of gene orthology

(2013) Toni Gabaldón et al.   NATURE REVIEWS GENETICS

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Evolution in subdivided plant populations: concepts, recent advances and future directions

(2013) John R. Pannell et al.   NEW PHYTOLOGIST

Network analysis for gene discovery in plant-specialized metabolism

(2013) YASUHIRO HIGASHI et al.   PLANT CELL AND ENVIRONMENT

Transcriptome and Proteome Data Reveal Candidate Genes for Pollinator Attraction in Sexually Deceptive Orchids

(2013) Khalid E. M. Sedeek et al.   PLoS One

Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene

(2013) C. R. Linnen et al.   SCIENCE

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

Divergent Selection Drives Genetic Differentiation in an R2R3-MYB Transcription Factor That Contributes to Incipient Speciation in Mimulus aurantiacus

(2013) Matthew A. Streisfeld et al.   PLoS Genetics

Five Years of GWAS Discovery

(2012) Peter M. Visscher et al.   AMERICAN JOURNAL OF HUMAN GENETICS

LARGE-SCALE CANDIDATE GENE SCAN REVEALS THE ROLE OF CHEMORECEPTOR GENES IN HOST PLANT SPECIALIZATION AND SPECIATION IN THE PEA APHID

(2012) Carole M. Smadja et al.   EVOLUTION

Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout

(2012) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

LocalizingFSToutliers on a QTL map reveals evidence for large genomic regions of reduced gene exchange during speciation-with-gene-flow

(2012) Sara Via et al.   MOLECULAR ECOLOGY

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

The many faces of pleiotropy

(2012) Annalise B. Paaby et al.   TRENDS IN GENETICS

The Genetic Basis of Pollinator Adaptation in a Sexually Deceptive Orchid

(2012) Shuqing Xu et al.   PLoS Genetics

Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

(2011) Kentaro K. Shimizu et al.   ANNALS OF BOTANY

Positional orthology: putting genomic evolutionary relationships into context

(2011) C. N. Dewey   BRIEFINGS IN BIOINFORMATICS

Pollinator Choice in Petunia Depends on Two Major Genetic Loci for Floral Scent Production

(2011) Ulrich Klahre et al.   CURRENT BIOLOGY

FLORAL ISOLATION IS THE MAIN REPRODUCTIVE BARRIER AMONG CLOSELY RELATED SEXUALLY DECEPTIVE ORCHIDS

(2011) Shuqing Xu et al.   EVOLUTION

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms

(2011) Günter P. Wagner et al.   NATURE REVIEWS GENETICS

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Genomic divergence during speciation: causes and consequences

(2011) P. Nosil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomics of isolation in hybrids

(2011) Z. Gompert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic islands of divergence in hybridizingHeliconiusbutterflies identified by large-scale targeted sequencing

(2011) Nicola J. Nadeau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

(2011) S. Via   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids

(2011) P. M. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

The ecological causes of evolution

(2011) Andrew D.C. MacColl   TRENDS IN ECOLOGY & EVOLUTION

Evolutionary Accessibility of Mutational Pathways

(2011) Jasper Franke et al.   PLoS Computational Biology

The Neutral Theory of Molecular Evolution in the Genomic Era

(2010) Masatoshi Nei et al.   Annual Review of Genomics and Human Genetics

POPULATION GENETICS, PLEIOTROPY, AND THE PREFERENTIAL FIXATION OF MUTATIONS DURING ADAPTIVE EVOLUTION

(2010) Matthew A. Streisfeld et al.   EVOLUTION

Genomic Admixture Analysis in European Populus spp. Reveals Unexpected Patterns of Reproductive Isolation and Mating

(2010) C. Lexer et al.   GENETICS

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Assessing population structure: FST and related measures

(2010) PATRICK G. MEIRMANS et al.   Molecular Ecology Resources

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Speciation genes in the genus Petunia

(2010) J. Venail et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergence in pigmentation at multiple levels: mutations, genes and function

(2010) M. Manceau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Local adaptation in European populations of Arabidopsis lyrata (Brassicaceae)

(2009) P. H. Leinonen et al.   AMERICAN JOURNAL OF BOTANY

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays

(2009) Bart HJ van den Berg et al.   BMC BIOINFORMATICS

It’s about time: the temporal dynamics of phenotypic selection in the wild

(2009) Adam M. Siepielski et al.   ECOLOGY LETTERS

Natural selection in action during speciation

(2009) S. Via   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the Origin and Spread of an Adaptive Allele in Deer Mice

(2009) C. R. Linnen et al.   SCIENCE

Evolution of reproductive isolation in plants

(2008) A Widmer et al.   HEREDITY

Live Fast and Die Young: Metal Effects on Condition and Physiology of Wild Yellow Perch from along Two Metal Contamination Gradients

(2008) Patrice Couture et al.   HUMAN AND ECOLOGICAL RISK ASSESSMENT

Evolutionary Transitions in Floral Color

(2008) Mark D. Rausher   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Altered trans-Regulatory Control of Gene Expression in Multiple Anthocyanin Genes Contributes to Adaptive Flower Color Evolution in Mimulus aurantiacus

(2008) Matthew A. Streisfeld et al.   MOLECULAR BIOLOGY AND EVOLUTION

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

(2008) Eric A. Gaucher et al.   NATURE

The strength and genetic basis of reproductive isolating barriers in flowering plants

(2008) D. B Lowry et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Are we there yet? Tracking the development of new model systems

(2008) Arhat Abzhanov et al.   TRENDS IN GENETICS