Evolutionary biochemistry: revealing the historical and physical causes of protein properties
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Evolutionary biochemistry: revealing the historical and physical causes of protein properties
Authors
Keywords
-
Journal
NATURE REVIEWS GENETICS
Volume 14, Issue 8, Pages 559-571
Publisher
Springer Nature
Online
2013-07-18
DOI
10.1038/nrg3540
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Analyses of the Effects of All Ubiquitin Point Mutants on Yeast Growth Rate
- (2013) Benjamin P. Roscoe et al. JOURNAL OF MOLECULAR BIOLOGY
- Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution
- (2013) B. C. Dickinson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Stability-mediated epistasis constrains the evolution of an influenza protein
- (2013) Lizhi Ian Gong et al. eLife
- Fitness analyses of all possible point mutations for regions of genes in yeast
- (2012) Ryan Hietpas et al. Nature Protocols
- Coevolution in RNA Molecules Driven by Selective Constraints: Evidence from 5S rRNA
- (2012) Nan Cheng et al. PLoS One
- Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme
- (2012) Nobuhiko Tokuriki et al. Nature Communications
- Protein Biophysics Explains Why Highly Abundant Proteins Evolve Slowly
- (2012) Adrian W.R. Serohijos et al. Cell Reports
- Bringing Molecules Back into Molecular Evolution
- (2012) Claus O. Wilke PLoS Computational Biology
- Mycobacterium tuberculosis Vitamin K Epoxide Reductase Homologue Supports Vitamin K–Dependent Carboxylation in Mammalian Cells
- (2011) Jian-Ke Tie et al. ANTIOXIDANTS & REDOX SIGNALING
- Tradeoffs and Optimality in the Evolution of Gene Regulation
- (2011) Frank J. Poelwijk et al. CELL
- MOLECULAR SIGNATURES OF SELECTION ON REPRODUCTIVE CHARACTER DISPLACEMENT OF FLOWER COLOR IN PHLOX DRUMMONDII
- (2011) Robin Hopkins et al. EVOLUTION
- Structural Basis of Cyanobacterial Photosystem II Inhibition by the Herbicide Terbutryn
- (2011) Matthias Broser et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- A system for the continuous directed evolution of biomolecules
- (2011) Kevin M. Esvelt et al. NATURE
- Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme
- (2011) Eric J. Hayden et al. NATURE
- Identification of two genes causing reinforcement in the Texas wildflower Phlox drummondii
- (2011) Robin Hopkins et al. NATURE
- Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB
- (2011) Vincent J. Lynch et al. NATURE
- Molecular spandrels: tests of adaptation at the genetic level
- (2011) Rowan D. H. Barrett et al. NATURE REVIEWS GENETICS
- Fitness Trade-Offs in the Evolution of Dihydrofolate Reductase and Drug Resistance in Plasmodium falciparum
- (2011) Marna S. Costanzo et al. PLoS One
- Experimental illumination of a fitness landscape
- (2011) R. T. Hietpas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Developmental Role of Agouti in Color Pattern Evolution
- (2011) M. Manceau et al. SCIENCE
- Evolution in Action: Plants Resistant to Herbicides
- (2010) Stephen B. Powles et al. Annual Review of Plant Biology
- Experimental Evolution of Adenylate Kinase Reveals Contrasting Strategies toward Protein Thermostability
- (2010) Corwin Miller et al. BIOPHYSICAL JOURNAL
- Optimizing non-natural protein function with directed evolution
- (2010) Eric M Brustad et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Signatures of protein biophysics in coding sequence evolution
- (2010) Claus O Wilke et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Analyzing protein structure and function using ancestral gene reconstruction
- (2010) Michael J Harms et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Fitness Epistasis and Constraints on Adaptation in a Human Immunodeficiency Virus Type 1 Protein Region
- (2010) J. da Silva et al. GENETICS
- The Effect of Clade-Specific Sequence Polymorphisms on HIV-1 Protease Activity and Inhibitor Resistance Pathways
- (2010) R. M. Bandaranayake et al. JOURNAL OF VIROLOGY
- Compensatory Mutations Restore Fitness during the Evolution of Dihydrofolate Reductase
- (2010) K. M. Brown et al. MOLECULAR BIOLOGY AND EVOLUTION
- Lineage-Specific Patterns of Functional Diversification in the - and -Globin Gene Families of Tetrapod Vertebrates
- (2010) F. G. Hoffmann et al. MOLECULAR BIOLOGY AND EVOLUTION
- Structure of a bacterial homologue of vitamin K epoxide reductase
- (2010) Weikai Li et al. NATURE
- High-resolution mapping of protein sequence-function relationships
- (2010) Douglas M Fowler et al. NATURE METHODS
- Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast
- (2010) K. A. Geiler-Samerotte et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance
- (2010) J. D. Bloom et al. SCIENCE
- Pervasive Cryptic Epistasis in Molecular Evolution
- (2010) Mark Lunzer et al. PLoS Genetics
- Molecular basis of human immunodeficiency virus drug resistance: An update
- (2009) Luis Menéndez-Arias ANTIVIRAL RESEARCH
- Comparing the Functional Roles of Nonconserved Sequence Positions in Homologous Transcription Repressors: Implications for Sequence/Function Analyses
- (2009) Sudheer Tungtur et al. JOURNAL OF MOLECULAR BIOLOGY
- Structural Bases for Stability–Function Tradeoffs in Antibiotic Resistance
- (2009) Veena L. Thomas et al. JOURNAL OF MOLECULAR BIOLOGY
- Retracing Evolution of Red Fluorescence in GFP-Like Proteins from Faviina Corals
- (2009) S. F. Field et al. MOLECULAR BIOLOGY AND EVOLUTION
- Parallel evolution in the major haemoglobin genes of eight species of Andean waterfowl
- (2009) K. G. McCRACKEN et al. MOLECULAR ECOLOGY
- An epistatic ratchet constrains the direction of glucocorticoid receptor evolution
- (2009) Jamie T. Bridgham et al. NATURE
- Exploring protein fitness landscapes by directed evolution
- (2009) Philip A. Romero et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Dynamic functional evolution of an odorant receptor for sex-steroid-derived odors in primates
- (2009) Hanyi Zhuang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Stepwise acquisition of pyrimethamine resistance in the malaria parasite
- (2009) E. R. Lozovsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adaptive landscapes and protein evolution
- (2009) M. Carneiro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A minimal sequence code for switching protein structure and function
- (2009) Patrick A. Alexander et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin
- (2009) J. F. Storz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inhibition of bacterial disulfide bond formation by the anticoagulant warfarin
- (2009) R. J. Dutton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Compensatory mutations are repeatable and clustered within proteins
- (2009) B. H. Davis et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Chloroquine Transport via the Malaria Parasite's Chloroquine Resistance Transporter
- (2009) R. E. Martin et al. SCIENCE
- The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species
- (2008) Sangyun Jeong et al. CELL
- Rewiring the Specificity of Two-Component Signal Transduction Systems
- (2008) Jeffrey M. Skerker et al. CELL
- The structure of protein evolution and the evolution of protein structure
- (2008) Richard A Goldstein CURRENT OPINION IN STRUCTURAL BIOLOGY
- Molecular Basis of Spectral Tuning in the Red- and Green-Sensitive (M/LWS) Pigments in Vertebrates
- (2008) S. Yokoyama et al. GENETICS
- Intense Neutral Drifts Yield Robust and Evolvable Consensus Proteins
- (2008) Shimon Bershtein et al. JOURNAL OF MOLECULAR BIOLOGY
- Frequent and Widespread Parallel Evolution of Protein Sequences
- (2008) A. Rokas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases
- (2008) Paul E O'Maille et al. Nature Chemical Biology
- Neutralism and selectionism: a network-based reconciliation
- (2008) Andreas Wagner NATURE REVIEWS GENETICS
- Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates
- (2008) S. Yokoyama et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
- (2008) Z. D. Blount et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Surface Sites for Engineering Allosteric Control in Proteins
- (2008) J. Lee et al. SCIENCE
- How Protein Stability and New Functions Trade Off
- (2008) Nobuhiko Tokuriki et al. PLoS Computational Biology
- Understanding Protein Evolution: From Protein Physics to Darwinian Selection
- (2007) Konstantin B. Zeldovich et al. Annual Review of Physical Chemistry
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation