Genomic signatures of selection at linked sites: unifying the disparity among species

Selective Sweeps in Multilocus Models of Quantitative Traits

(2012) P. Pavlidis et al.   GENETICS

Limited Evidence for Classic Selective Sweeps in African Populations

(2012) J. M. Granka et al.   GENETICS

The Role of Background Selection in Shaping Patterns of Molecular Evolution and Variation: Evidence from Variability on the Drosophila X Chromosome

(2012) B. Charlesworth   GENETICS

Patterns of Neutral Diversity Under General Models of Selective Sweeps

(2012) G. Coop et al.   GENETICS

The Effects of Deleterious Mutations on Evolution at Linked Sites

(2012) Brian Charlesworth   GENETICS

Genomic Variation in Natural Populations of Drosophila melanogaster

(2012) C. H. Langley et al.   GENETICS

Variation in Base-Substitution Mutation in Experimental and Natural Lineages of Caenorhabditis Nematodes

(2012) Dee R. Denver et al.   Genome Biology and Evolution

The Effect of Variation in the Effective Population Size on the Rate of Adaptive Molecular Evolution in Eukaryotes

(2012) Toni I. Gossmann et al.   Genome Biology and Evolution

Influence of finite-sites mutation, population subdivision and sampling schemes on patterns of nucleotide polymorphism for species with molecular hyperdiversity

(2012) ASHER D. CUTTER et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Rate of de novo mutations and the importance of father’s age to disease risk

(2012) Augustine Kong et al.   NATURE

Evidence of widespread selection on standing variation in Europe at height-associated SNPs

(2012) Michael C Turchin et al.   NATURE GENETICS

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

(2012) Erik C Andersen et al.   NATURE GENETICS

A Fine-Scale Chimpanzee Genetic Map from Population Sequencing

(2012) A. Auton et al.   SCIENCE

Recombination Modulates How Selection Affects Linked Sites in Drosophila

(2012) Suzanne E. McGaugh et al.   PLOS BIOLOGY

Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?

(2012) Ellen M. Leffler et al.   PLOS BIOLOGY

Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster

(2012) Andreas Massouras et al.   PLoS Genetics

Genetic Variants in REC8, RNF212, and PRDM9 Influence Male Recombination in Cattle

(2012) Cynthia Sandor et al.   PLoS Genetics

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

RECOMBINATION AND HITCHHIKING OF DELETERIOUS ALLELES

(2011) Matthew Hartfield et al.   EVOLUTION

The Structure of Genealogies in the Presence of Purifying Selection: A Fitness-Class Coalescent

(2011) Aleksandra M. Walczak et al.   GENETICS

The Joint Effects of Background Selection and Genetic Recombination on Local Gene Genealogies

(2011) Kai Zeng et al.   GENETICS

Hitchhiking Effect of a Beneficial Mutation Spreading in a Subdivided Population

(2011) Yuseob Kim et al.   GENETICS

A Method for Inferring the Rate of Occurrence and Fitness Effects of Advantageous Mutations

(2011) Adrian Schneider et al.   GENETICS

Genetic Variation and the Fate of Beneficial Mutations in Asexual Populations

(2011) Gregory I. Lang et al.   GENETICS

Genetic Draft and Quasi-Neutrality in Large Facultatively Sexual Populations

(2011) R. A. Neher et al.   GENETICS

Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis

(2011) Tanja Slotte et al.   Genome Biology and Evolution

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

(2011) A. Hobolth et al.   GENOME RESEARCH

The influence of recombination on SNP diversity in chickens

(2011) Yousheng Rao et al.   HEREDITAS

How closely does genetic diversity in finite populations conform to predictions of neutral theory? Large deficits in regions of low recombination

(2011) R Frankham   HEREDITY

Recombination rate variation in closely related species

(2011) C S Smukowski et al.   HEREDITY

Polymorphism, Divergence, and the Role of Recombination in Saccharomyces cerevisiae Genome Evolution

(2011) A. D. Cutter et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural Selection in Gene-Dense Regions Shapes the Genomic Pattern of Polymorphism in Wild and Domesticated Rice

(2011) J. M. Flowers et al.   MOLECULAR BIOLOGY AND EVOLUTION

Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination

(2011) A. GERALDES et al.   MOLECULAR ECOLOGY

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

(2011) A. Branca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular evidence for a single evolutionary origin of domesticated rice

(2011) J. Molina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classic Selective Sweeps Were Rare in Recent Human Evolution

(2011) R. D. Hernandez et al.   SCIENCE

Weighing the evidence for adaptation at the molecular level

(2011) Justin C. Fay   TRENDS IN GENETICS

Evidence for Hitchhiking of Deleterious Mutations within the Human Genome

(2011) Sung Chun et al.   PLoS Genetics

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

(2011) Shmuel Sattath et al.   PLoS Genetics

Caenorhabditis briggsae Recombinant Inbred Line Genotypes Reveal Inter-Strain Incompatibility and the Evolution of Recombination

(2011) Joseph A. Ross et al.   PLoS Genetics

Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome

(2011) Kirk E. Lohmueller et al.   PLoS Genetics

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

THE DISTINCTIVE FOOTPRINTS OF LOCAL HITCHHIKING IN A VARIED ENVIRONMENT AND GLOBAL HITCHHIKING IN A SUBDIVIDED POPULATION

(2010) Nicolas Bierne   EVOLUTION

Drosophila melanogaster recombination rate calculator

(2010) Anna-Sophie Fiston-Lavier et al.   GENE

Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?

(2010) P. Ralph et al.   GENETICS

Mutational Effects and Population Dynamics During Viral Adaptation Challenge Current Models

(2010) C. R. Miller et al.   GENETICS

Effective Population Size and the Efficacy of Selection on the X Chromosomes of Two Closely Related Drosophila Species

(2010) Peter Andolfatto et al.   Genome Biology and Evolution

Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae

(2010) A. D. Cutter et al.   GENOME RESEARCH

Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps

(2010) B. L. Dumont et al.   GENOME RESEARCH

Genetic and Evolutionary Correlates of Fine-Scale Recombination Rate Variation in Drosophila persimilis

(2010) Laurie S. Stevison et al.   JOURNAL OF MOLECULAR EVOLUTION

Effective Population Size Is Positively Correlated with Levels of Adaptive Divergence among Annual Sunflowers

(2010) J. L. Strasburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

(2010) N. Lartillot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fine-scale recombination rate differences between sexes, populations and individuals

(2010) Augustine Kong et al.   NATURE

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

The population genomics of plant adaptation

(2010) Mathieu Siol et al.   NEW PHYTOLOGIST

Genetic hitchhiking versus background selection: the controversy and its implications

(2010) W. Stephan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic linkage and natural selection

(2010) N. H. Barton   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans

(2010) M. V. Rockman et al.   SCIENCE

Multi-site adaptation in the presence of infrequent recombination

(2010) Igor M. Rouzine et al.   THEORETICAL POPULATION BIOLOGY

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations

(2009) T. Stadler et al.   GENETICS

Protein Rates of Evolution Are Predicted by Double-Strand Break Events, Independent of Crossing-over Rates

(2009) Claudia C. Weber et al.   Genome Biology and Evolution

Ploidy and the Causes of Genomic Evolution

(2009) A. C. Gerstein et al.   JOURNAL OF HEREDITY

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

(2009) A. Eyre-Walker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

A genome-wide view of Caenorhabditis elegans base-substitution mutation processes

(2009) D. R. Denver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing

(2009) Rob J. Kulathinal et al.   PLoS Genetics

Widespread Genomic Signatures of Natural Selection in Hominid Evolution

(2009) Graham McVicker et al.   PLoS Genetics

Pervasive Natural Selection in the Drosophila Genome?

(2009) Guy Sella et al.   PLoS Genetics

The Role of Geography in Human Adaptation

(2009) Graham Coop et al.   PLoS Genetics

The Impact of Natural Selection on the Genome: Emerging Patterns in Drosophila and Arabidopsis

(2008) Stephen I. Wright et al.   Annual Review of Ecology Evolution and Systematics

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

Positive correlation between recombination rate and nucleotide diversity is shown under domestication selection in the chicken genome

(2008) Lin Fang et al.   CHINESE SCIENCE BULLETIN

TOWARD A SELECTION THEORY OF MOLECULAR EVOLUTION

(2008) Matthew W. Hahn   EVOLUTION

Selective Sweep at a Quantitative Trait Locus in the Presence of Background Genetic Variation

(2008) Luis-Miguel Chevin et al.   GENETICS

Multilocus Patterns of Polymorphism and Selection Across the X Chromosome of Caenorhabditis remanei

(2008) A. D. Cutter   GENETICS

No effect of recombination on the efficacy of natural selection in primates

(2008) K. Bullaughey et al.   GENOME RESEARCH

Mutagenesis from Meiotic Recombination Is Not a Primary Driver of Sequence Divergence between Saccharomyces Species

(2008) M. A. F. Noor   MOLECULAR BIOLOGY AND EVOLUTION

Comparative genomics and the study of evolution by natural selection

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

(2008) Eugenio Mancera et al.   NATURE

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence

(2008) R. J. Kulathinal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans

(2008) G. Coop et al.   SCIENCE

The effects of deleterious mutations on evolution in non-recombining genomes

(2008) Vera B. Kaiser et al.   TRENDS IN GENETICS

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome

(2008) Adam R. Boyko et al.   PLoS Genetics