Transcriptome and Proteome Data Reveal Candidate Genes for Pollinator Attraction in Sexually Deceptive Orchids

Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity

(2012) Ruifeng He et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetics of tribe Orchideae (Orchidaceae: Orchidoideae) based on combined DNA matrices: inferences regarding timing of diversification and evolution of pollination syndromes

(2012) Luis A. Inda et al.   ANNALS OF BOTANY

Labellum transcriptome reveals alkene biosynthetic genes involved in orchid sexual deception and pollination-induced senescence

(2012) Filipa Monteiro et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

From landing lights to mimicry: the molecular regulation of flower colouration and mechanisms for pigmentation patterning

(2012) Kevin M. Davies et al.   FUNCTIONAL PLANT BIOLOGY

The mirror crack'd: both pigment and structure contribute to the glossy blue appearance of the mirror orchid,Ophrys speculum

(2012) Silvia Vignolini et al.   NEW PHYTOLOGIST

Methylation effect on chalcone synthase gene expression determines anthocyanin pigmentation in floral tissues of two Oncidium orchid cultivars

(2012) Xiao-Jing Liu et al.   PLANTA

The Genetic Basis of Pollinator Adaptation in a Sexually Deceptive Orchid

(2012) Shuqing Xu et al.   PLoS Genetics

Altered gene expression and ecological divergence in sibling allopolyploids of Dactylorhiza (Orchidaceae)

(2011) Ovidiu Paun et al.   BMC EVOLUTIONARY BIOLOGY

Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids

(2011) Yu-Yun Hsiao et al.   BMC GENOMICS

FLORAL ISOLATION IS THE MAIN REPRODUCTIVE BARRIER AMONG CLOSELY RELATED SEXUALLY DECEPTIVE ORCHIDS

(2011) Shuqing Xu et al.   EVOLUTION

The PI/GLO-like locus in orchids: Duplication and purifying selection at synonymous sites within Orchidinae (Orchidaceae)

(2011) Carmela Cantone et al.   GENE

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

(2011) C. Adamidi et al.   GENOME RESEARCH

Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome

(2011) JOSEPH I. HOFFMAN   Molecular Ecology Resources

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Characterization of Oncidium ‘Gower Ramsey’ Transcriptomes using 454 GS-FLX Pyrosequencing and Their Application to the Identification of Genes Associated with Flowering Time

(2011) Yu-Yun Chang et al.   PLANT AND CELL PHYSIOLOGY

Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids

(2011) P. M. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Orchid pollination by sexual deception: pollinator perspectives

(2010) A. C. Gaskett   BIOLOGICAL REVIEWS

Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage

(2010) Luigi Falginella et al.   BMC GENOMICS

Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures

(2010) Isabel Desgagné-Penix et al.   BMC PLANT BIOLOGY

Comparative labellum micromorphology of the sexually deceptive temperate orchid genusOphrys: diverse epidermal cell types and multiple origins of structural colour

(2010) ELIZABETH BRADSHAW et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Development of expressed sequence tag resources for Vanda Mimi Palmer and data mining for EST-SSR

(2010) Seow-Ling Teh et al.   MOLECULAR BIOLOGY REPORTS

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

Biological origins of normal-chain hydrocarbons: a pathway model based on cuticular wax analyses of maize silks

(2010) M. Ann D. N. Perera et al.   PLANT JOURNAL

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

(2010) Antje Feller et al.   PLANT JOURNAL

Tissue-Specific Transcriptomics of the Exotic Invasive Insect Pest Emerald Ash Borer (Agrilus planipennis)

(2010) Omprakash Mittapalli et al.   PLoS One

Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina

(2010) Hao Wang et al.   PROTEOMICS

A hitchhiker's guide to the MADS world of plants

(2010) Lydia Gramzow et al.   GENOME BIOLOGY

On the roles of colour and scent in a specialized floral mimicry system

(2009) Nicolas J. Vereecken et al.   ANNALS OF BOTANY

Why are orchid flowers so diverse? Reduction of evolutionary constraints by paralogues of class B floral homeotic genes

(2009) Mariana Mondragón-Palomino et al.   ANNALS OF BOTANY

Genome size diversity in orchids: consequences and evolution

(2009) I. J. Leitch et al.   ANNALS OF BOTANY

Genetic patterns and pollination inOphrys iricolorandO. mesaritica(Orchidaceae): sympatric evolution by pollinator shift

(2009) PHILIPP M. SCHLÜTER et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Plant cuticles shine: advances in wax biosynthesis and export

(2009) Ljerka Kunst et al.   CURRENT OPINION IN PLANT BIOLOGY

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function

(2009) M. A. Grobei et al.   GENOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The Proteomics Identifications database: 2010 update

(2009) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Floral Isolation, Specialized Pollination, and Pollinator Behavior in Orchids

(2008) Florian P. Schiestl et al.   Annual Review of Entomology

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags

(2008) Heesun Shin et al.   BMC BIOLOGY

Evolution of sexual mimicry in the orchid subtribe orchidinae: the role of preadaptations in the attraction of male bees as pollinators

(2008) Florian P Schiestl et al.   BMC EVOLUTIONARY BIOLOGY

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

A MYB Transcription Factor Regulates Very-Long-Chain Fatty Acid Biosynthesis for Activation of the Hypersensitive Cell Death Response in Arabidopsis

(2008) S. Raffaele et al.   PLANT CELL

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

Molecular mechanisms of floral mimicry in orchids

(2008) Philipp M. Schlüter et al.   TRENDS IN PLANT SCIENCE

MADS about the evolution of orchid flowers

(2008) Mariana Mondragón-Palomino et al.   TRENDS IN PLANT SCIENCE