Two diversities meet in the rhizosphere: root specialized metabolites and microbiome

Microbial keystone taxa drive succession of plant residue chemistry

(2023) Xiaoyue Wang et al.   ISME Journal

Interspecific plant interaction via root exudates structures the disease suppressiveness of rhizosphere microbiomes

(2023) Xingang Zhou et al.   Molecular Plant

Effect of strigolactones on recruitment of the rice root-associated microbiome

(2022) Bora Kim et al.   FEMS MICROBIOLOGY ECOLOGY

Bacillus subtilis Impact on Plant Growth, Soil Health and Environment: Dr. Jekyll and Mr. Hyde

(2022) Subhasmita Mahapatra et al.   JOURNAL OF APPLIED MICROBIOLOGY

Natural variation in root exudation of GABA and DIMBOA impacts the maize root endosphere and rhizosphere microbiomes

(2022) Peng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bacillus amyloliquefaciens as an excellent agent for biofertilizer and biocontrol in agriculture: An overview for its mechanisms

(2022) Lin Luo et al.   MICROBIOLOGICAL RESEARCH

Evasion of plant immunity by microbial pathogens

(2022) Yan Wang et al.   NATURE REVIEWS MICROBIOLOGY

Flavonoid-attracted Aeromonas sp. from the Arabidopsis root microbiome enhances plant dehydration resistance

(2022) Danxia He et al.   ISME Journal

Genetic modification of flavone biosynthesis in rice enhances biofilm formation of soil diazotrophic bacteria and biological nitrogen fixation

(2022) Dawei Yan et al.   PLANT BIOTECHNOLOGY JOURNAL

An ancestral function of strigolactones as symbiotic rhizosphere signals

(2022) Kyoichi Kodama et al.   Nature Communications

Soil microbiomes and one health

(2022) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Trichoderma: a multipurpose, plant-beneficial microorganism for eco-sustainable agriculture

(2022) Sheridan L. Woo et al.   NATURE REVIEWS MICROBIOLOGY

Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)

(2021) Katherine M. Murphy et al.   Scientific Reports

Plant immune system activation is necessary for efficient root colonization by auxin-secreting beneficial bacteria

(2021) Elhanan Tzipilevich et al.   Cell Host & Microbe

Mechanisms underlying legume–rhizobium symbioses

(2021) Jun Yang et al.   Journal of Integrative Plant Biology

Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots

(2021) Katarzyna W. Wolinska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protective role of the Arabidopsis leaf microbiota against a bacterial pathogen

(2021) Christine M. Vogel et al.   Nature Microbiology

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

(2020) Elisa Korenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Unique and common traits in mycorrhizal symbioses

(2020) Andrea Genre et al.   NATURE REVIEWS MICROBIOLOGY

Root-Secreted Coumarins and the Microbiota Interact to Improve Iron Nutrition in Arabidopsis

(2020) Christopher J. Harbort et al.   Cell Host & Microbe

Pinpointing secondary metabolites that shape the composition and function of the plant microbiome

(2020) Richard P Jacoby et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root exudates drive soil‐microbe‐nutrient feedbacks in response to plant growth

(2020) Mengli Zhao et al.   PLANT CELL AND ENVIRONMENT

Does Karrikin Signaling Shape the Rhizomicrobiome via the Strigolactone Biosynthetic Pathway?

(2020) Fahad Nasir et al.   TRENDS IN PLANT SCIENCE

Secretion dynamics of soyasaponins in soybean roots and effects to modify the bacterial composition

(2020) Teruhisa Fujimatsu et al.   Plant Direct

VAPYRIN attenuates defence by repressing PR gene induction and localized lignin accumulation during arbuscular mycorrhizal symbiosis of Petunia hybrida

(2020) Min Chen et al.   NEW PHYTOLOGIST

Coordination between microbiota and root endodermis supports plant mineral nutrient homeostasis

(2020) Isai Salas-González et al.   SCIENCE

Metabolic regulation of the maize rhizobiome by benzoxazinoids

(2019) T. E. Anne Cotton et al.   ISME Journal

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

Phytobiome metabolism: beneficial soil microbes steer crop plants' secondary metabolism

(2019) Elisa Korenblum et al.   PEST MANAGEMENT SCIENCE

A specialized metabolic network selectively modulates Arabidopsis root microbiota

(2019) Ancheng C. Huang et al.   SCIENCE

Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota

(2019) Qingwen Chen et al.   Science China-Life Sciences

Maize synthesized benzoxazinoids affect the host associated microbiome

(2019) Enoch Narh Kudjordjie et al.   Microbiome

Endophytic strains of Trichoderma increase plants’ photosynthetic capability

(2019) G.E. Harman et al.   JOURNAL OF APPLIED MICROBIOLOGY

Root exudates: from plant to rhizosphere and beyond

(2019) Vicente Vives-Peris et al.   PLANT CELL REPORTS

Root-specific camalexin biosynthesis controls the plant growth-promoting effects of multiple bacterial strains

(2019) Anna Koprivova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strigolactones shape the rhizomicrobiome in rice (Oryza sativa)

(2019) Fahad Nasir et al.   PLANT SCIENCE

Qualitative and Quantitative NAD+ Metabolomics Lead to Discovery of Multiple Functional Nicotinate N-Glycosyltransferase in Arabidopsis

(2019) Lingyun Liu et al.   Frontiers in Plant Science

A Promiscuous CYP706A3 Reduces Terpene Volatile Emission from Arabidopsis Flowers, Affecting Florivores and the Floral Microbiome

(2019) Benoît Boachon et al.   PLANT CELL

Rhizosphere modelling reveals spatiotemporal distribution of daidzein shaping soybean rhizosphere bacterial community

(2019) Fuki Okutani et al.   PLANT CELL AND ENVIRONMENT

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia

(2018) Ruben Garrido-Oter et al.   Cell Host & Microbe

Calling from distance: attraction of soil bacteria by plant root volatiles

(2018) Kristin Schulz-Bohm et al.   ISME Journal

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Scopoletin 8-hydroxylase: a novel enzyme involved in coumarin biosynthesis and iron-deficiency responses in Arabidopsis

(2018) Joanna Siwinska et al.   JOURNAL OF EXPERIMENTAL BOTANY

Exometabolomic Profiling of Bacterial Strains as Cultivated Using Arabidopsis Root Extract as the Sole Carbon Source

(2018) Richard P. Jacoby et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A new family of sesterterpenoids isolated around the Pacific Rim

(2018) Harry J. Shirley et al.   NATURAL PRODUCT REPORTS

Biosynthesis of redox-active metabolites in response to iron deficiency in plants

(2018) Jakub Rajniak et al.   Nature Chemical Biology

Interactions between Trichoderma harzianum and defoliating Verticillium dahliae in resistant and susceptible wild olive clones

(2018) I. Carrero-Carrón et al.   PLANT PATHOLOGY

Discovery, Biosynthesis and Stress-Related Accumulation of Dolabradiene-Derived Defenses in Maize

(2018) Sibongile Mafu et al.   PLANT PHYSIOLOGY

Scopoletin 8-Hydroxylase-Mediated Fraxetin Production is Crucial for Iron Mobilization

(2018) Huei-Hsuan Tsai et al.   PLANT PHYSIOLOGY

Strigolactones as Regulators of Symbiotrophy of Plants and Microorganisms

(2018) O. Yu. Shtark et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

(2018) Tami L. Swenson et al.   Nature Communications

MeNA, Controlled by Reversible Methylation of Nicotinate, Is an NAD Precursor that Undergoes Long-Distance Transport in Arabidopsis

(2018) Ranran Wu et al.   Molecular Plant

(+)-Thalianatriene and (−)-Retigeranin B Catalyzed by Sesterterpene Synthases from Arabidopsis thaliana

(2017) Jie Shao et al.   ORGANIC LETTERS

Metabolite profiling of non-sterile rhizosphere soil

(2017) Pierre Pétriacq et al.   PLANT JOURNAL

A Novel N-Methyltransferase in Arabidopsis Appears to Feed a Conserved Pathway for Nicotinate Detoxification among Land Plants and Is Associated with Lignin Biosynthesis

(2017) Wei Li et al.   PLANT PHYSIOLOGY

Unearthing a sesterterpene biosynthetic repertoire in the Brassicaceae through genome mining reveals convergent evolution

(2017) Ancheng C. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fatty acids in arbuscular mycorrhizal fungi are synthesized by the host plant

(2017) Leonie H. Luginbuehl et al.   SCIENCE

Plants transfer lipids to sustain colonization by mutualistic mycorrhizal and parasitic fungi

(2017) Yina Jiang et al.   SCIENCE

The Ecological Role of Volatile and Soluble Secondary Metabolites Produced by Soil Bacteria

(2017) Olaf Tyc et al.   TRENDS IN MICROBIOLOGY

Effect of rhizobia symbiosis on lignin levels and forage quality in alfalfa ( Medicago sativa L.)

(2016) Zhiqiang Zhang et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Bidirectional Interaction between Phyllospheric Microbiotas and Plant Volatile Emissions

(2016) Gerard Farré-Armengol et al.   TRENDS IN PLANT SCIENCE

Accumulation and Secretion of Coumarinolignans and other Coumarins in Arabidopsis thaliana Roots in Response to Iron Deficiency at High pH

(2016) Patricia Sisó-Terraza et al.   Frontiers in Plant Science

The Effect of Root Exudate 7,4′-Dihydroxyflavone and Naringenin on Soil Bacterial Community Structure

(2016) Márton Szoboszlay et al.   PLoS One

In vitroevaluation of the antioxidant and antimicrobial activity of DIMBOA [2,4-dihydroxy-7-methoxy-2H-1,4-benzoxazin-3(4H)-one]

(2015) Michał Gleńsk et al.   NATURAL PRODUCT RESEARCH

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Direct metabolomics for plant cells by live single-cell mass spectrometry

(2015) Takashi Fujii et al.   Nature Protocols

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

NicotinateO-Glucosylation Is an Evolutionarily Metabolic Trait Important for Seed Germination under Stress Conditions inArabidopsis thaliana

(2015) Wei Li et al.   PLANT CELL

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Triterpene Biosynthesis in Plants

(2014) Ramesha Thimmappa et al.   Annual Review of Plant Biology

Identifying Beneficial Qualities ofTrichoderma parareeseifor Plants

(2014) M. Belén Rubio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of Hydroxycinnamic Acid Degradation in Agrobacterium fabrum Reveals a Coenzyme A-Dependent, Beta-Oxidative Deacetylation Pathway

(2014) Tony Campillo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Streptopyridines, volatile pyridine alkaloids produced byStreptomycessp. FORM5

(2014) Ulrike Groenhagen et al.   Beilstein Journal of Organic Chemistry

Zeaoxazolinone, a new antifungal agent from Zea mays roots

(2014) Gamal A. Mohamed et al.   MEDICINAL CHEMISTRY RESEARCH

Salicylic acid preventsTrichoderma harzianumfrom entering the vascular system of roots

(2014) Ana Alonso-Ramírez et al.   MOLECULAR PLANT PATHOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Plant lignin content altered by soil microbial community

(2014) Alison E. Bennett et al.   NEW PHYTOLOGIST

Profiling of secondary metabolites in root exudates of Arabidopsis thaliana

(2014) Nadine Strehmel et al.   PHYTOCHEMISTRY

Terpene synthases are widely distributed in bacteria

(2014) Yuuki Yamada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigation of terpene diversification across multiple sequenced plant genomes

(2014) Alexander M. Boutanaev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root exudates mediated interactions belowground

(2014) Feth el Zahar Haichar et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Effective Strategy for Exploring Unknown Metabolic Pathways by Genome Mining

(2013) Dorianne A. Castillo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Involvement of the ABCG37 transporter in secretion of scopoletin and derivatives byArabidopsisroots in response to iron deficiency

(2013) Pierre Fourcroy et al.   NEW PHYTOLOGIST

Feruloyl-CoA 6'-Hydroxylase1-Dependent Coumarins Mediate Iron Acquisition from Alkaline Substrates in Arabidopsis

(2013) N. B. Schmid et al.   PLANT PHYSIOLOGY

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

(2013) Kazuki Saito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Early Root Herbivory Impairs Arbuscular Mycorrhizal Fungal Colonization and Shifts Defence Allocation in Establishing Plantago lanceolata

(2013) Alison E. Bennett et al.   PLoS One

Involvement of Trichoderma Trichothecenes in the Biocontrol Activity and Induction of Plant Defense-Related Genes

(2012) M. G. Malmierca et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Triterpenoids

(2012) Robert A. Hill et al.   NATURAL PRODUCT REPORTS

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The Biosynthesis of the Aroma Volatile 2-Methyltetrahydrothiophen-3-one in the Bacterium Chitinophaga Fx7914

(2010) Thorben Nawrath et al.   CHEMBIOCHEM

A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi

(2010) Jason D. Hoeksema et al.   ECOLOGY LETTERS

Identification and profiling of volatile metabolites of the biocontrol fungus Trichoderma atroviride by HS-SPME-GC-MS

(2010) Norbert Stoppacher et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Release of plant-borne flavonoids into the rhizosphere and their role in plant nutrition

(2010) Stefano Cesco et al.   PLANT AND SOIL

Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns

(2010) Y. A. Millet et al.   PLANT CELL

Exogenous glucosinolate produced by Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots

(2009) Mélanie Bressan et al.   ISME Journal

Product Profile of PEN3: The Last Unexamined Oxidosqualene Cyclase inArabidopsis thaliana

(2009) Pietro Morlacchi et al.   ORGANIC LETTERS

Scopoletin is biosynthesized viaortho-hydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase inArabidopsis thaliana

(2008) Kosuke Kai et al.   PLANT JOURNAL

Deciphering the genetic determinants for aerobic nicotinic acid degradation: The nic cluster from Pseudomonas putida KT2440

(2008) J. I. Jimenez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Glucosinolate Metabolism Pathway in Living Plant Cells Mediates Broad-Spectrum Antifungal Defense

(2008) P. Bednarek et al.   SCIENCE